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GET1
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                                          • SUMMARY

                                          • TISSUE

                                          • BRAIN

                                          • SINGLE CELL

                                          • SUBCELL

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                                          • BLOOD

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                                          • STRUCTURE

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                                          • GET1
                                          SINGLE CELL FALLOPIAN TUBE Show tissue menu
                                          ADIPOSE TISSUE ADRENAL GLAND BLOOD BONE MARROW BRAIN BREAST COLON ENDOMETRIUM EPIDIDYMIS ESOPHAGUS
                                          EYE FALLOPIAN TUBE HEART MUSCLE KIDNEY LIVER LUNG LYMPH NODE OVARY PANCREAS PITUITARY GLAND
                                          PLACENTA PROSTATE RECTUM SALIVARY GLAND SKELETAL MUSCLE SKIN SMALL INTESTINE SPLEEN STOMACH TESTIS
                                          THYMUS THYROID GLAND TONGUE URINARY BLADDER VASCULATURE
                                          Single cell type
                                          Tabula sapiens
                                          Tissue cell type
                                          SINGLE CELL TYPE CELL TYPE MARKERS
                                          Cell types
                                          Glandular epithelial cells
                                          Mesenchymal cells
                                          Muscle cells
                                          Ciliated cells
                                          Blood and immune cells
                                          Endothelial and mural cells
                                          Stem and proliferating cells
                                          Methods
                                          FALLOPIAN TUBE DETAIL SUMMARY
                                          Fallopian tube ciliated cellsFallopian secretory cellsSmooth muscle cellsVascular endothelial cellsLymphatic endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMast cellsMonocytesMacrophagesT-cellsInnate lymphoid cellsPlasma cellsNK-cells0246810nCPMCiliated cellsGlandular epithelial cellsMuscle cellsEndothelial and mural cellsMesenchymal cellsBlood and immune cells
                                          SINGLE CELL TYPE - FALLOPIAN TUBEi

                                          RNA expression in the single cell type clusters identified in this tissue visualized by a UMAP plot (top) and a bar chart (bottom).

                                          - UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart below. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. The cells are colored according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%)

                                          - The LEGEND shows RNA expression (nTPM) in each cell type cluster. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.

                                          Cell type color
                                          Cluster color
                                          Colored according to cell type group
                                          Colored according to clusters
                                          Read count filter: 0
                                          Cluster filter:
                                           
                                          −5051015−10−5051015
                                          c-0c-1c-2c-3c-4c-5c-6c-7c-8c-9c-10c-11c-12c-13c-14c-15c-16c-17c-18c-19c-20c-21c-22
                                          Cluster Cell type Expression (nCPM)
                                          0 10
                                          c-0 Secretory fallopian epithel...
                                          c-1 Myofibroblast-like (SEMA5A+...
                                          c-2 Stromal Fibroblasts
                                          c-3 Smooth muscle cells
                                          c-4 Ciliated fallopian epitheli...
                                          c-5 T-cells (CD8+)
                                          c-6 Venous endothelial cells
                                          c-7 T-cells (IL4I1+)
                                          c-8 Lymphatic endothelial cells
                                          c-9 Vascular smooth muscle cell
                                          c-10 Mast cells
                                          c-11 Monocytes
                                          c-12 Macrophages
                                          c-13 T-cells (CD4+)
                                          c-14 Capillary endothelial cells
                                          c-15 NK-cells
                                          c-16 Arterial endothelial cells
                                          c-17 T-cells (CD8+)
                                          c-18 Plasma cells
                                          c-19 Pericytes
                                          c-20 ILCs
                                          c-21 EC doublets
                                          c-22 Fallopian basal stem cells
                                          CELL TYPE MARKERSi

                                          The heatmap in this section shows expression of the currently selected gene (on top) and well-known cell type markers in the different single cell type clusters of this tissue. The panel on the left shows which cell type each marker is associated with. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.

                                          Hover the mouse-pointer over the individual data points (squares) to see nTPM level and Z-score. Clicking on a gene name redirects to the corresponding gene page.

                                          Z-score is when you normalize a variable such that the standard deviation is 1 and the mean is 0. Thus, all the genes are easier to compare, as they have the same center and distribution.

                                          SINGLE CELL TYPE
                                          Max-norm
                                          Z-score
                                          Fraction of highest expression (≥1 nTPM)
                                          log2(nTPM+1) z-score
                                          GET1CAPSFOXJ1EPCAMKRT7PAX8ACTG2DESMYH11PECAM1VWFACKR1POSTNHEY1HEY2SEMA3GCA4RGCCLYVE1PROX1PDGFRBRGS5STEAP4ACTA2CNN1COL1A1DCNFBLN2PDGFRACPA3TPSAB1TPSB2FCN1IL1BS100A8S100A9VCANC1QBC1QCHLA-DRAHLA-DRB1F13A1CD3DCD3GCD4CD8AIL7RGATA3HPGDSIL9RNCR2RORCDERL3IGHA1GZMANKG7PRF1KRT5TP63Fallopian secretory cells c-0Fibroblasts c-1Fibroblasts c-2Smooth muscle cells c-3Fallopian tube ciliated cells c-4T-cells c-5Vascular endothelial cells c-6T-cells c-7Lymphatic endothelial cells c-8Vascular smooth muscle cells c-9Mast cells c-10Monocytes c-11Macrophages c-12T-cells c-13Vascular endothelial cells c-14NK-cells c-15Vascular endothelial cells c-16T-cells c-17Plasma cells c-18Pericytes c-19Innate lymphoid cells c-20Vascular endothelial cells c-21Fallopian basal stem cells c-22Current geneFallopian tube ciliated cellsFallopian secretory cellsSmooth muscle cellsVascular endothelial cellsLymphatic endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMast cellsMonocytesMacrophagesT-cellsInnate lymphoid cellsPlasma cellsNK-cellsFallopian basal stem cells00.250.50.751-4-2024
                                           

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