We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GET1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

 
Field
All
Term
Gene name
Class
Blood group antigen proteins
Subclass
 
Category
 
Keyword
Chromosome
External id
Tissue
 
Cell type
 
Expression
Antibody panel
 
Tissue
 
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
 
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Yes
Data type
Column
Gene


                              • SPECIFICITY
                              • DISTRIBUTION
                              • EXPRESSION
                              • SPECIFICITY
                              • DISTRIBUTION
                              • EXPRESSION
                              • SPECIFICITY
                              • DISTRIBUTION
                              • EXPRESSION
                              • SPECIFICITY
                              • DISTRIBUTION
                              • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • RELIABILITY
                                  • SUBCELLULAR VARIATION
                                  • MULTILOCALIZATION
                                  • OTHER
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • SPECIFICITY
                                  • DISTRIBUTION
                                  • EXPRESSION
                                  • Check all
                                  • Uncheck all
                                          • SUMMARY

                                          • TISSUE

                                          • BRAIN

                                          • SINGLE CELL

                                          • SUBCELL

                                          • CANCER

                                          • BLOOD

                                          • CELL LINE

                                          • STRUCTURE

                                          • INTERACTION

                                          • GET1
                                          SINGLE CELL ADRENAL GLAND Show tissue menu
                                          ADIPOSE TISSUE ADRENAL GLAND BLOOD BONE MARROW BRAIN BREAST COLON ENDOMETRIUM EPIDIDYMIS ESOPHAGUS
                                          EYE FALLOPIAN TUBE HEART MUSCLE KIDNEY LIVER LUNG LYMPH NODE OVARY PANCREAS PITUITARY GLAND
                                          PLACENTA PROSTATE RECTUM SALIVARY GLAND SKELETAL MUSCLE SKIN SMALL INTESTINE SPLEEN STOMACH TESTIS
                                          THYMUS THYROID GLAND TONGUE URINARY BLADDER VASCULATURE
                                          Single cell type
                                          Tabula sapiens
                                          Tissue cell type
                                          SINGLE CELL TYPE TISSUE CELL TYPE CELL TYPE MARKERS
                                          Cell types
                                          Endocrine cells
                                          Blood and immune cells
                                          Endothelial and mural cells
                                          Mesenchymal cells
                                          Methods
                                          Cell type enrichment
                                          Adrenal gland
                                          Methods
                                          ADRENAL GLAND DETAIL SUMMARY
                                          Adrenal cortex cellsAdrenal medulla cells0246810nCPMEndocrine cells
                                          SINGLE CELL TYPE - ADRENAL GLANDi

                                          RNA expression in the single cell type clusters identified in this tissue visualized by a UMAP plot (top) and a bar chart (bottom).

                                          - UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart below. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. The cells are colored according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%)

                                          - The LEGEND shows RNA expression (nTPM) in each cell type cluster. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.

                                          Cell type color
                                          Cluster color
                                          Colored according to cell type group
                                          Colored according to clusters
                                          Read count filter: 0
                                          Cluster filter:
                                           
                                          0510152025−15−10−50510
                                          c-0c-1c-2c-3c-4c-5c-6c-7
                                          Cluster Cell type Expression (nCPM)
                                          0 10
                                          c-0 Zona fasciculata cells
                                          c-1 Zona glomerulosa cells
                                          c-2 Zona reticularis cells
                                          c-3 Macrophages
                                          c-4 Endothelial cells
                                          c-5 Chromaffin cells
                                          c-6 Stromal cells
                                          c-7 T-cells
                                          TISSUE CELL TYPE - ADRENAL GLANDi

                                          The plot below shows the enrichment prediction score for each cell type profiled in the tissue. This score is the mean correlation between the selected gene and the 3 reference transcripts selected to represent each cell type profiled within the tissue. An enlarged symbol indicates classification of the gene as cell type enriched in the corresponding cell type. Hover the mouse pointer over the symbols or cell type names to see the mean correlation values.

                                          Category
                                          Alphabetical
                                          Enrichment
                                          Adrenal cortex cells_1Adrenal cortex cells_2Adrenal cortex cells_3Adrenal medulla cellsMitotic cells (Adrenal gland)Endothelial cellsSmooth muscle cellsFibroblastsMacrophagesT-cellsPlasma cells0.30.40.50.60.70.80.91.0EnrichmentGlandular epithelial cellsEndocrine cellsStem and proliferating cellsEndothelial and mural cellsMuscle cellsMesenchymal cellsBlood and immune cells
                                          CELL TYPE MARKERSi

                                          The heatmap in this section shows expression of the currently selected gene (on top) and well-known cell type markers in the different single cell type clusters of this tissue. The panel on the left shows which cell type each marker is associated with. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.

                                          Hover the mouse-pointer over the individual data points (squares) to see nTPM level and Z-score. Clicking on a gene name redirects to the corresponding gene page.

                                          Z-score is when you normalize a variable such that the standard deviation is 1 and the mean is 0. Thus, all the genes are easier to compare, as they have the same center and distribution.

                                          SINGLE CELL TYPE
                                          TISSUE CELL TYPE
                                          Max-norm
                                          Z-score
                                          Fraction of highest expression (≥1 nTPM)
                                          log2(nTPM+1) z-score
                                          GET1MC2RSTARCYP11B2CYP11B1SULT2A1CHGBSLC18A2THPECAM1VWFCOL1A1DCNFBLN2PDGFRAC1QBC1QCCD3DCD3GCD4CD8AIL7RAdrenal cortex cells c-0Adrenal cortex cells c-1Adrenal cortex cells c-2Macrophages c-3Vascular endothelial cells c-4Adrenal medulla cells c-5Stromal cells c-6T-cells c-7Current geneAdrenal cortex cellsAdrenal medulla cellsVascular endothelial cellsFibroblastsMacrophagesT-cells00.250.50.751-4-2024
                                          GET1 ATP10ADACH1VSNL1CYP11A1FDX1PORALADAOX1RETSATCHGAPHOX2ATHBUB1MKI67TOP2AERGMMRN2PECAM1ACTG2CNN1MYH11FBLN1OLFML1PDGFRBC1QCCSF1RTYROBPCD3ELCKTRBC2IGKCIGLC2JCHAINATP10ADACH1VSNL1CYP11A1FDX1PORALADAOX1RETSATCHGAPHOX2ATHBUB1MKI67TOP2AERGMMRN2PECAM1ACTG2CNN1MYH11FBLN1OLFML1PDGFRBC1QCCSF1RTYROBPCD3ELCKTRBC2IGKCIGLC2JCHAINCurrent geneAdrenal cortex cells_1Adrenal cortex cells_2Adrenal cortex cells_3Adrenal medulla cellsMitotic cells (Adrenal gland)Endothelial cellsSmooth muscle cellsFibroblastsMacrophagesT-cellsPlasma cells<00.250.50.751
                                           

                                          Contact

                                          • NEWS ARTICLES
                                          • PRESS ROOM

                                          The Project

                                          • INTRODUCTION
                                          • ORGANIZATION
                                          • PUBLICATIONS

                                          The Human Protein Atlas

                                          • DOWNLOADABLE DATA
                                          • LICENCE & CITATION
                                          • HELP & FAQ
                                          The Human Protein Atlas project is funded
                                          by the Knut & Alice Wallenberg Foundation.

                                          contact@proteinatlas.org