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GET1
HPA
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Blood group antigen proteins
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ipTM
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                                          • SUMMARY

                                          • TISSUE

                                          • BRAIN

                                          • SINGLE CELL

                                          • SUBCELL

                                          • CANCER

                                          • BLOOD

                                          • CELL LINE

                                          • STRUCTURE

                                          • INTERACTION

                                          • GET1
                                          SINGLE CELL ENDOMETRIUM Show tissue menu
                                          ADIPOSE TISSUE ADRENAL GLAND BLOOD BONE MARROW BRAIN BREAST COLON ENDOMETRIUM EPIDIDYMIS ESOPHAGUS
                                          EYE FALLOPIAN TUBE HEART MUSCLE KIDNEY LIVER LUNG LYMPH NODE OVARY PANCREAS PITUITARY GLAND
                                          PLACENTA PROSTATE RECTUM SALIVARY GLAND SKELETAL MUSCLE SKIN SMALL INTESTINE SPLEEN STOMACH TESTIS
                                          THYMUS THYROID GLAND TONGUE URINARY BLADDER VASCULATURE
                                          Single cell type
                                          Tabula sapiens
                                          Tissue cell type
                                          SINGLE CELL TYPE CELL TYPE MARKERS
                                          Cell types
                                          Glandular epithelial cells
                                          Mesenchymal cells
                                          Ciliated cells
                                          Endothelial and mural cells
                                          Blood and immune cells
                                          Specialized epithelial cells
                                          Methods
                                          ENDOMETRIUM DETAIL SUMMARY
                                          Endometrial ciliated cellsEndometrial glandular cellsEndometrial secretory cellsEndometrial luminal cellsVascular endothelial cellsLymphatic endothelial cellsEndometrial stromal cellsMacrophagesT-cellsInnate lymphoid cellsB-cellsPDCsNK-cells0246810nCPMCiliated cellsGlandular epithelial cellsEndothelial and mural cellsMesenchymal cellsBlood and immune cells
                                          SINGLE CELL TYPE - ENDOMETRIUMi

                                          RNA expression in the single cell type clusters identified in this tissue visualized by a UMAP plot (top) and a bar chart (bottom).

                                          - UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart below. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. The cells are colored according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%)

                                          - The LEGEND shows RNA expression (nTPM) in each cell type cluster. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.

                                          Cell type color
                                          Cluster color
                                          Colored according to cell type group
                                          Colored according to clusters
                                          Read count filter: 0
                                          Cluster filter:
                                           
                                          Cluster Cell type Expression (nCPM)
                                          0 10
                                          c-0 Glandular cells (secretory...
                                          c-1 Luminal cells (secretory ph...
                                          c-2 Decidualized stromal cells
                                          c-3 Decidualized stromal cells
                                          c-4 Decidualized stromal cells
                                          c-5 Glandular secretory cells (...
                                          c-6 Decidualized stromal cells
                                          c-7 Decidualized stromal cells
                                          c-8 Ciliated epithelial cells
                                          c-9 Glandular secretory cells (...
                                          c-10 Pre-glandular cells (prolif...
                                          c-11 Pre-luminal cells (secretor...
                                          c-12 Glandular secretory cells (...
                                          c-13 Decidualized stromal cells
                                          c-14 Glandular cells (secretory...
                                          c-15 Vascular endothelial cells
                                          c-16 T-cells
                                          c-17 Mural cells
                                          c-18 NK-cells
                                          c-19 Ciliated epithelial cells
                                          c-20 Pre-glandular cells (secret...
                                          c-21 Pre-glandular cells (secret...
                                          c-22 Luminal cells (secretory ph...
                                          c-23 Pre-glandular cells (prolif...
                                          c-24 Pre-luminal cells (secretor...
                                          c-25 Pre-luminal cells (secretor...
                                          c-26 Non-decidualized stromal ce
                                          c-27 Glandular secretory cells (...
                                          c-28 Pre-glandular cells (prolif...
                                          c-29 Pre-luminal cells (prolif. ...
                                          c-30 NK-cells
                                          c-31 Pre-luminal cells (prolif. ...
                                          c-32 T-cells
                                          c-33 Pre-luminal cells (prolif. ...
                                          c-34 Macrophages/Monocytes
                                          c-35 ILC3
                                          c-36 Glandular/luminar doublets
                                          c-37 Pre-ciliated epithelial cel
                                          c-38 T-cells
                                          c-39 Pre-glandular cells (secret...
                                          c-40 Secretory epithelial cells ...
                                          c-41 B-cells
                                          c-42 ILC3
                                          c-43 Pre-glandular cells (secret...
                                          c-44 Cervical basal progenitor c...
                                          c-45 Plasmacytoid DCs
                                          c-46 Ciliated epithelial cells
                                          c-47 Lymphatic endothelial cells
                                          CELL TYPE MARKERSi

                                          The heatmap in this section shows expression of the currently selected gene (on top) and well-known cell type markers in the different single cell type clusters of this tissue. The panel on the left shows which cell type each marker is associated with. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.

                                          Hover the mouse-pointer over the individual data points (squares) to see nTPM level and Z-score. Clicking on a gene name redirects to the corresponding gene page.

                                          Z-score is when you normalize a variable such that the standard deviation is 1 and the mean is 0. Thus, all the genes are easier to compare, as they have the same center and distribution.

                                          SINGLE CELL TYPE
                                          Max-norm
                                          Z-score
                                          Fraction of highest expression (≥1 nTPM)
                                          log2(nTPM+1) z-score
                                          GET1CCNOMUC12FOXJ1PIFOKRT5TP63IHHSOX9CBR3HPRT1OPRK1SUFUS100PSCGB2A2DPP4GPX3PAEPMUC5BSAA1WNT7ASULT1E1CLDN22VTCN1PECAM1VWFACKR1POSTNLYVE1PROX1PDGFRBRGS5STEAP4COL1A1DCNPCOLCEF13A1TUNARDKK1IL15FCN1IL1BS100A8S100A9VCANC1QBC1QCHLA-DRAHLA-DRB1CD3DCD3GCD4CD8AIL7RGATA3HPGDSIL9RNCR2RORCBANK1CD19MS4A1CLEC4CIL3RAIRF7GZMANKG7PRF1Endometrial glandular cells c-0Endometrial luminal cells c-1Endometrial stromal cells c-2Endometrial stromal cells c-3Endometrial stromal cells c-4Endometrial glandular cells c-5Endometrial stromal cells c-6Endometrial stromal cells c-7Endometrial ciliated cells c-8Endometrial glandular cells c-9Endometrial glandular cells c-10Endometrial luminal cells c-11Endometrial glandular cells c-12Endometrial stromal cells c-13Endometrial glandular cells c-14Vascular endothelial cells c-15T-cells c-16Mural cells c-17NK-cells c-18Endometrial ciliated cells c-19Endometrial glandular cells c-20Endometrial glandular cells c-21Endometrial luminal cells c-22Endometrial glandular cells c-23Endometrial luminal cells c-24Endometrial luminal cells c-25Endometrial stromal cells c-26Endometrial glandular cells c-27Endometrial glandular cells c-28Endometrial luminal cells c-29NK-cells c-30Endometrial luminal cells c-31T-cells c-32Endometrial luminal cells c-33Macrophages c-34Innate lymphoid cells c-35Endometrial luminal cells c-36Endometrial ciliated cells c-37T-cells c-38Endometrial glandular cells c-39Endometrial secretory cells c-40B-cells c-41Innate lymphoid cells c-42Endometrial glandular cells c-43Cervical basal progenitor cells c-44PDCs c-45Endometrial ciliated cells c-46Lymphatic endothelial cells c-47Current geneEndometrial ciliated cellsCervical basal progenitor cellsEndometrial glandular cellsEndometrial secretory cellsEndometrial luminal cellsVascular endothelial cellsLymphatic endothelial cellsPericytesEndometrial stromal cellsMonocytesMacrophagesT-cellsInnate lymphoid cellsB-cellsPDCsNK-cells00.250.50.751-4-2024
                                           

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