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VPS37B
HPA
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                                          • SUMMARY

                                          • TISSUE

                                          • BRAIN

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                                          • VPS37B
                                          TISSUE PRIMARY DATA URINARY BLADDER Show tissue menu
                                          ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
                                          DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
                                          NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
                                          SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                          ANTIBODIES
                                          AND
                                          VALIDATION
                                          Dictionary
                                          Urinary bladder
                                          Tissue proteome
                                          Tissue methods
                                          URINARY BLADDER - Expression summary
                                          Protein expressioni

                                          On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                          No data
                                          RNA expressioni

                                          A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

                                          Scroll down to view mRNA expression data in more detail.

                                          Consensus:16.9 nTPM
                                          HPA:16.0 nTPM
                                          GTEx:16.9 nTPM
                                          FANTOM5:55.3 Scaled Tags Per Million
                                          URINARY BLADDER - SINGLE CELL RNA EXPRESSION
                                          Explore single cell type data
                                          Schwann cellsUrothelial cellsSmooth muscle cellsVascular endothelial cellsLymphatic endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMast cellsNeutrophilsMonocytesMacrophagesT-cellsInnate lymphoid cellsB-cellsPlasma cellsNK-cells050100150200250300nCPM

                                          URINARY BLADDER - HPA RNA-seqi

                                          The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

                                          Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

                                          Average nTPMi

                                          Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                          16.0
                                          overview
                                          Male, age 74
                                          Urinary bladder sample 264
                                          nTPM: 13.1
                                          Cell types%
                                          Urothelial cells:
                                          5

                                          Smooth muscle cells:
                                          60

                                          Fibroblasts:
                                          20

                                          Endothelial cells:
                                          10

                                          Other cell types:
                                          5

                                          overview
                                          Male, age 80
                                          Urinary bladder sample 265
                                          nTPM: 14.3
                                          Cell types%
                                          Urothelial cells:
                                          10

                                          Smooth muscle cells:
                                          45

                                          Fibroblasts:
                                          15

                                          Endothelial cells:
                                          10

                                          Other cell types:
                                          20

                                          N/A
                                          Female, age 0.1
                                          Urinary bladder sample 1597
                                          nTPM: 20.4
                                          N/A
                                          Female, age 0.1
                                          Urinary bladder sample 1598
                                          nTPM: 16.1

                                          URINARY BLADDER - GTEx RNA-seqi

                                          RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                          Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

                                          Max subtype nTPMi

                                          Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                          16.9
                                          GTEx sample id Sample description nTPM
                                          12.816.020.09.328.705101520253035
                                          12.816.020.09.328.705101520253035
                                          Bladder
                                          Average nTPM: 16.9
                                          Samples: 77

                                          Max nTPM: 35.3
                                          Min nTPM: 9.3
                                          Std nTPM: 5.2
                                          Median nTPM: 16.0
                                          GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 35.3
                                          GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 31.0
                                          GTEX-OHPL-1926-SM-HAV18 60-69 years, female 28.7
                                          GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 27.1
                                          GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 26.6
                                          GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 26.5
                                          GTEX-SNOS-0526-SM-4DM54 40-49 years, male 25.3
                                          GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 25.1
                                          GTEX-R55G-1326-SM-HAUYU 40-49 years, female 24.7
                                          GTEX-QXCU-2226-SM-GPI87 50-59 years, male 23.1
                                          GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 22.4
                                          GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 21.5
                                          GTEX-SNMC-0826-SM-4DM66 20-29 years, male 21.2
                                          GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 20.8
                                          GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 20.8
                                          GTEX-T2IS-2526-SM-GRR23 20-29 years, female 20.4
                                          GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 20.3
                                          GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 20.3
                                          GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 20.0
                                          GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 20.0
                                          GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 19.7
                                          GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 19.2
                                          GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 18.8
                                          GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 18.8
                                          GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 18.1
                                          GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 17.8
                                          GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 17.5
                                          GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 17.5
                                          GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 17.3
                                          GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 16.9
                                          GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 16.7
                                          GTEX-RNOR-2126-SM-EXURR 50-59 years, female 16.7
                                          GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 16.6
                                          GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 16.5
                                          GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 16.5
                                          GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 16.3
                                          GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 16.2
                                          GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 16.1
                                          GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 16.0
                                          GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 15.9
                                          GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 15.8
                                          GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 15.6
                                          GTEX-R53T-1426-SM-H7OG3 50-59 years, female 15.6
                                          GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 15.5
                                          GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 15.1
                                          GTEX-TMMY-1526-SM-4DXST 40-49 years, female 15.1
                                          GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 14.4
                                          GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 14.2
                                          GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 14.1
                                          GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 13.9
                                          GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 13.8
                                          GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 13.8
                                          GTEX-REY6-2026-SM-GPRYL 60-69 years, male 13.6
                                          GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 13.2
                                          GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 13.1
                                          GTEX-R55C-1226-SM-GOQY7 40-49 years, male 13.1
                                          GTEX-QV44-1426-SM-GPI8D 50-59 years, male 13.0
                                          GTEX-P44H-2226-SM-E9U4P 40-49 years, male 12.8
                                          GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 12.7
                                          GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 12.6
                                          GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 12.6
                                          GTEX-S32W-1126-SM-4AD5V 50-59 years, female 12.5
                                          GTEX-S33H-1926-SM-EYYVH 30-39 years, male 12.2
                                          GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 12.1
                                          GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 11.9
                                          GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 11.8
                                          GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 11.8
                                          GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 11.7
                                          GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 11.7
                                          GTEX-Q734-1226-SM-GRR21 40-49 years, female 11.4
                                          GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 11.3
                                          GTEX-R45C-2426-SM-HL11G 60-69 years, female 11.2
                                          GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 11.0
                                          GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 10.9
                                          GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 10.0
                                          GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 9.9
                                          GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 9.3
                                          Show allShow less

                                          URINARY BLADDER - FANTOM5 CAGEi

                                          RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                          Max subtype Scaled Tags Per Millioni

                                          Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

                                          55.3
                                          FANTOM5 sample id Sample description Scaled Tags Per Million
                                          Bladder
                                          Scaled Tags Per Million: 55.3
                                          FF:10011-101C2 55,58,79 years, mixed 55.3

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