MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.5 nTPM
HPA Brain:28.2 nTPM
GTEx:14.5 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:7.7 nTPM
Mouse:4.1 nTPM
Allen mouse:9.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200nCPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.1
2586 Male, age 75, left hemisphere 38.6
1830 Male, age 51, unknown 28.6
2666 Male, age 74, left hemisphere 28.3
2019 Male, age 18, unknown 27.8
2828 Female, age 72, unknown 27.2
1833 Male, age 53, unknown 27.0
2219 Male, age 76, both hemispheres 26.9
1870 Female, age 42, unknown 26.2
1827 Male, age 72, unknown 25.5
2411 Female, age 72, unknown 24.8
Dorsal raphe nucleus
nTPM: 23.0
2016 Female, age 72, unknown 26.1
1828 Male, age 53, unknown 24.3
2750 Male, age 76, both hemispheres 23.2
2047 Male, age 72, unknown 20.9
2298 Female, age 72, unknown 20.3
Inferior colliculus
nTPM: 23.5
2849 Male, age 72, unknown 26.6
1890 Male, age 53, unknown 24.2
1848 Female, age 42, unknown 23.7
2097 Female, age 72, unknown 19.7
Median raphe nucleus
nTPM: 21.8
2220 Male, age 76, midline 21.8
Periaquaductal grey, anterior
nTPM: 26.5
2502 Female, age 75, unknown 30.1
1795 Male, age 51, unknown 26.4
1947 Male, age 18, unknown 22.9
Periaquaductal grey, dorsal
nTPM: 24.8
1831 Male, age 72, unknown 25.4
1840 Male, age 53, unknown 25.4
2464 Female, age 72, unknown 24.6
2850 Male, age 76, both hemispheres 23.9
Periaquaductal grey, lateral
nTPM: 26.0
2053 Male, age 18, unknown 26.6
2272 Male, age 74, both hemispheres 25.8
2140 Male, age 76, both hemispheres 25.7
Pretectal area
nTPM: 25.3
2407 Male, age 75, both hemispheres 31.3
2667 Female, age 75, unknown 27.8
2316 Male, age 76, right hemisphere 27.1
1816 Male, age 51, unknown 24.9
2273 Male, age 74, both hemispheres 24.8
2825 Male, age 18, unknown 24.3
1815 Male, age 53, unknown 24.0
2224 Female, age 72, unknown 24.0
1817 Female, age 42, unknown 23.8
2007 Male, age 72, unknown 23.4
1944 Female, age 72, unknown 23.3
Red nucleus
nTPM: 26.9
2584 Male, age 75, left hemisphere 32.6
1904 Male, age 53, unknown 29.8
2588 Male, age 74, left hemisphere 29.8
2227 Male, age 72, unknown 29.0
2769 Male, age 72, unknown 28.9
2785 Male, age 18, unknown 28.6
1865 Male, age 51, unknown 27.2
2823 Male, age 76, right hemisphere 26.8
1954 Female, age 42, unknown 25.0
2503 Female, age 72, unknown 24.1
1821 Female, age 72, unknown 20.9
2725 Female, age 75, unknown 19.9
Substantia nigra
nTPM: 23.7
2583 Male, age 75, right hemisphere 32.0
2665 Male, age 74, both hemispheres 27.0
2590 Female, age 75, unknown 26.0
2699 Male, age 18, unknown 26.0
1851 Male, age 51, unknown 23.4
1916 Female, age 42, unknown 21.4
2409 Female, age 72, unknown 21.3
1889 Female, age 72, unknown 20.7
2241 Male, age 72, unknown 19.7
1941 Male, age 53, unknown 19.6
Superior colliculus
nTPM: 28.2
2664 Male, age 75, both hemispheres 40.5
1995 Male, age 72, unknown 31.2
1913 Female, age 42, unknown 30.4
1839 Male, age 51, unknown 27.4
2261 Male, age 18, unknown 27.3
2668 Female, age 75, unknown 26.6
1796 Male, age 53, unknown 25.9
2087 Female, age 72, unknown 25.5
2587 Male, age 74, left hemisphere 25.0
1895 Male, age 76, right hemisphere 22.6
Ventral tegmental area
nTPM: 23.9
2223 Female, age 72, unknown 29.9
2021 Male, age 53, unknown 26.4
1942 Male, age 51, unknown 23.4
1915 Female, age 42, unknown 22.3
2410 Female, age 72, unknown 21.5
2218 Male, age 76, both hemispheres 20.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.5
Samples: 183

Max nTPM: 32.6
Min nTPM: 5.2
Std nTPM: 4.3
Median nTPM: 14.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 32.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 30.9
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 26.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 25.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 24.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 24.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 24.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 23.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 23.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 22.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.9
FF:10158-103A5 76 years, female 32.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.6
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.7
Sample A Female 6.7
Sample B Female 7.9
Sample C Male 7.4
Sample D Male 8.3
6.27.28.85.111.401234567891011
 		Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 11.4
Min nTPM: 5.1
Sample A Female 11.4
Sample B Female 7.9
Sample C Male 6.5
Sample D Male 5.1
Periaqueductal gray
nTPM: 7.0
Samples: 3

Max nTPM: 7.5
Min nTPM: 6.1
Sample B Female 7.4
Sample C Male 7.5
Sample D Male 6.1
5.96.36.85.86.90.00.51.01.52.02.53.03.54.04.55.05.56.06.5
 		Superior colliculi
nTPM: 6.4
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.8
Sample A Female 6.9
Sample B Female 5.9
Sample C Male 5.8
Sample D Male 6.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.1
Mouse sample Sample description nTPM
3.54.14.83.34.90.00.51.01.52.02.53.03.54.04.5
 		Midbrain
nTPM: 4.1
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.3
Sample A Male 4.9
Sample B Male 3.5
Sample C Female 3.3
Sample D Female 4.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.9
68637682 Antisense, RP_050126_01_D05, Mouse strain C57BL/6J (56 days, male) 9.9

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