HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:44.0 nTPM
GTEx:24.3 nTPM
FANTOM5:39.9 Scaled Tags Per Million
Pig:15.2 nTPM
Mouse:15.8 nTPM
Allen mouse:16.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038217Antibody HPA038218
Glial cells Not detectedNot detected
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 44.0
Sample id Sample description nTPM
Hippocampus
nTPM: 33.5
2148 Female, age 91, left hemisphere 37.1
1911 Female, age 85, right hemisphere 36.2
2621 Female, age 67, right hemisphere 34.6
1898 Male, age 80, left hemisphere 32.8
1855 Male, age 76, left hemisphere 32.2
2529 Female, age 94, left hemisphere 28.0
Dentate gyrus
nTPM: 34.9
2010 Male, age 76, both hemispheres 39.1
2531 Female, age 67, both hemispheres 38.8
2246 Female, age 85, both hemispheres 36.3
1927 Female, age 91, both hemispheres 35.4
2528 Male, age 74, both hemispheres 32.1
2530 Female, age 94, left hemisphere 27.7
Entorhinal gyrus
nTPM: 31.2
2613 Female, age 94, left hemisphere 36.5
2686 Male, age 75, right hemisphere 34.2
2764 Male, age 80, right hemisphere 32.2
1787 Male, age 76, left hemisphere 29.2
2117 Female, age 91, right hemisphere 27.7
1938 Female, age 85, left hemisphere 27.6
Hippocampus, CA1
nTPM: 43.6
2749 Male, age 80, left hemisphere 60.9
2045 Male, age 76, both hemispheres 51.4
2082 Female, age 91, right hemisphere 37.3
1873 Female, age 85, both hemispheres 35.4
2527 Male, age 74, both hemispheres 32.9
Hippocampus, CA2
nTPM: 33.7
1892 Male, age 76, both hemispheres 39.0
1963 Male, age 80, left hemisphere 38.0
1940 Female, age 85, left hemisphere 35.6
2113 Female, age 91, right hemisphere 35.2
2249 Male, age 74, both hemispheres 28.8
2437 Female, age 94, left hemisphere 25.4
Hippocampus, CA3
nTPM: 44.0
2137 Male, age 80, left hemisphere 55.5
2620 Female, age 94, left hemisphere 55.1
1867 Male, age 76, both hemispheres 48.0
2861 Female, age 67, both hemispheres 42.6
2436 Male, age 74, both hemispheres 33.9
1891 Female, age 85, both hemispheres 29.1
Parahippocampal cortex
nTPM: 32.2
2693 Female, age 94, both hemispheres 38.4
2245 Female, age 91, both hemispheres 37.1
2622 Female, age 67, right hemisphere 35.7
2532 Female, age 72, left hemisphere 33.1
2018 Male, age 76, both hemispheres 32.1
1933 Female, age 85, both hemispheres 30.3
2692 Male, age 74, both hemispheres 30.2
1850 Male, age 80, both hemispheres 30.1
1990 Female, age 91, right hemisphere 27.4
2250 Female, age 67, right hemisphere 27.4
Perirhinal gyrus
nTPM: 33.5
2521 Female, age 94, right hemisphere 37.3
1847 Female, age 91, left hemisphere 33.4
2848 Male, age 76, right hemisphere 33.3
1841 Female, age 85, right hemisphere 32.0
1794 Male, age 80, right hemisphere 31.2
Subiculum
nTPM: 32.4
2042 Male, age 76, both hemispheres 42.6
1901 Male, age 80, both hemispheres 34.9
2729 Female, age 91, right hemisphere 33.5
2619 Male, age 74, both hemispheres 31.6
1977 Female, age 85, both hemispheres 28.1
2438 Female, age 94, left hemisphere 23.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 24.3
GTEx sample id Sample description nTPM
18.623.128.88.042.905101520253035404550556065
Brain - Hippocampus
Average nTPM: 24.3
Samples: 255

Max nTPM: 69.2
Min nTPM: 8.0
Std nTPM: 8.4
Median nTPM: 23.1
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 69.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 53.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 51.8
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 51.5
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 47.9
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 46.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 42.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 42.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 41.9
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 41.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 40.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 39.9
FF:10153-102I9 76 years, female 42.4
FF:10169-103B7 60 years, female 37.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 15.2
Pig sample Sample description nTPM
10.611.011.710.412.60123456789101112
 		Subiculum
nTPM: 11.3
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.4
Sample A Female 12.6
Sample B Female 10.6
Sample C Male 10.4
Sample D Male 11.4
10.811.712.610.413.3012345678910111213
 		Dorsal hippocampus
nTPM: 11.8
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.4
Sample A Female 11.0
Sample B Female 12.3
Sample C Male 10.4
Sample D Male 13.3
Entorhinal cortex
nTPM: 15.2
Samples: 4

Max nTPM: 17.6
Min nTPM: 13.0
Sample A Female 17.6
Sample B Female 13.0
Sample C Male 14.2
Sample D Male 15.9
8.810.110.86.811.301234567891011
 		Ventral hippocampus
nTPM: 9.6
Samples: 4

Max nTPM: 11.3
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 9.4
Sample C Male 10.7
Sample D Male 11.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 15.8
Mouse sample Sample description nTPM
12.715.418.511.820.502468101214161820
 		Entorhinal cortex
nTPM: 15.8
Samples: 4

Max nTPM: 20.5
Min nTPM: 11.8
Sample A Male 17.8
Sample B Male 20.5
Sample C Female 11.8
Sample D Female 13.0
Hippocampal formation
nTPM: 14.4
Samples: 4

Max nTPM: 16.1
Min nTPM: 12.9
Sample A Male 14.0
Sample B Male 16.1
Sample C Female 12.9
Sample D Female 14.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 16.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.2
68637682 Antisense, RP_050126_01_D05, Mouse strain C57BL/6J (56 days, male) 16.2

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