COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: High
Glandular cells: High
Peripheral nerve/ganglion: Medium
RNA expressioni
Consensus:31.7 nTPM
HPA:25.8 nTPM
GTEx:31.7 nTPM
FANTOM5:52.1 Scaled Tags Per Million
COLON - SINGLE CELL RNA EXPRESSION
Neuroendocrine cellsTuft cellsColonocytesGoblet cellsT-cellsNK-cellsEnteric transient amplifying cellsEnteric stem cells0100200300400500nCPM

COLON - Antibody stainingi
Antibody HPA038217Antibody HPA038218
Endothelial cells HighMedium
Glandular cells HighHigh
Peripheral nerve/ganglion MediumMedium





COLON - HPA RNA-seqi
Average nTPMi 25.8
overview
Male, age 54
Colon sample 67
nTPM: 29.6
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview
Female, age 57
Colon sample 68
nTPM: 29.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview
Male, age 80
Colon sample 69
nTPM: 35.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview
Male, age 68
Colon sample 70
nTPM: 42.6
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 68
Colon sample 76
nTPM: 23.7
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview
Female, age 61
Colon sample 299
nTPM: 13.3
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview
Male, age 80
Colon sample 300
nTPM: 16.3
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview
Female, age 78
Colon sample 368
nTPM: 26.8
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview
Male, age 84
Colon sample 381
nTPM: 13.9
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview
Male, age 80
Colon sample 384
nTPM: 27.3
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview
Female, age 78
Colon sample 389
nTPM: 21.9
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 69
Colon sample 391
nTPM: 24.4
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview
Female, age 72
Colon sample 403
nTPM: 29.9
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Max subtype nTPMi 31.7
GTEx sample id Sample description nTPM
11.013.016.37.624.20510152025303540455055
Colon - Sigmoid
Average nTPM: 14.7
Samples: 419

Max nTPM: 59.0
Min nTPM: 7.6
Std nTPM: 6.7
Median nTPM: 13.0
GTEX-WOFM-1926-SM-4M9R2 20-29 years, male 59.0
GTEX-ZQUD-1026-SM-4YCEZ 30-39 years, male 54.0
GTEX-Z9EW-1126-SM-HLJRW 40-49 years, male 52.6
GTEX-XMK1-1626-SM-HLJRZ 40-49 years, male 45.1
GTEX-V1D1-1626-SM-HLJSH 50-59 years, male 43.9
GTEX-VJYA-2126-SM-4KL1O 60-69 years, male 41.3
GTEX-1OJC3-1826-SM-DTX93 20-29 years, male 40.3
GTEX-W5WG-2026-SM-4LMIB 50-59 years, female 38.7
GTEX-Y5V6-1626-SM-4VDT2 60-69 years, male 37.9
GTEX-1AMEY-1826-SM-72D5L 30-39 years, female 37.1
GTEX-15FZZ-1826-SM-6LLJP 30-39 years, female 36.9
Show allShow less
15.026.945.28.177.7020406080100120140
Colon - Transverse
Average nTPM: 31.7
Samples: 479

Max nTPM: 159.7
Min nTPM: 8.1
Std nTPM: 20.0
Median nTPM: 26.9
GTEX-14JIY-3326-SM-6871E 60-69 years, male 159.7
GTEX-Q2AG-2026-SM-HAUY4 40-49 years, female 157.8
GTEX-1IOXB-2626-SM-CJI2N 50-59 years, male 130.8
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 97.7
GTEX-1HBPN-1826-SM-GA91G 50-59 years, male 77.7
GTEX-1S82Z-1926-SM-HLJQ2 30-39 years, female 77.3
GTEX-1N2EE-2726-SM-F2I1N 60-69 years, male 76.9
GTEX-13111-0726-SM-5DUVE 50-59 years, male 74.3
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 73.3
GTEX-1LG7Z-1426-SM-CXKYV 30-39 years, male 72.0
GTEX-PWCY-1026-SM-48TD4 20-29 years, female 70.8
Show allShow less

COLON - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 52.1
FF:10014-101C5 62,83,84 years, mixed 52.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org