MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.1 nTPM
HPA Brain:3.8 nTPM
GTEx:3.1 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Mouse:12.0 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200nCPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 3.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.5
2219 Male, age 76, both hemispheres 3.0
2411 Female, age 72, unknown 3.0
2586 Male, age 75, left hemisphere 2.7
1870 Female, age 42, unknown 2.6
2019 Male, age 18, unknown 2.6
1830 Male, age 51, unknown 2.5
1833 Male, age 53, unknown 2.5
2666 Male, age 74, left hemisphere 2.4
1827 Male, age 72, unknown 2.1
2828 Female, age 72, unknown 2.1
Dorsal raphe nucleus
nTPM: 2.1
2047 Male, age 72, unknown 2.3
1828 Male, age 53, unknown 2.2
2298 Female, age 72, unknown 2.2
2750 Male, age 76, both hemispheres 2.1
2016 Female, age 72, unknown 1.9
Inferior colliculus
nTPM: 2.2
2097 Female, age 72, unknown 2.6
1890 Male, age 53, unknown 2.2
2849 Male, age 72, unknown 2.1
1848 Female, age 42, unknown 1.9
Median raphe nucleus
nTPM: 2.5
2220 Male, age 76, midline 2.5
Periaquaductal grey, anterior
nTPM: 2.3
1795 Male, age 51, unknown 2.5
1947 Male, age 18, unknown 2.5
2502 Female, age 75, unknown 2.0
Periaquaductal grey, dorsal
nTPM: 2.6
1831 Male, age 72, unknown 2.7
2464 Female, age 72, unknown 2.6
1840 Male, age 53, unknown 2.5
2850 Male, age 76, both hemispheres 2.5
Periaquaductal grey, lateral
nTPM: 2.3
2053 Male, age 18, unknown 2.4
2140 Male, age 76, both hemispheres 2.3
2272 Male, age 74, both hemispheres 2.3
Pretectal area
nTPM: 3.8
2007 Male, age 72, unknown 7.2
1816 Male, age 51, unknown 6.8
1817 Female, age 42, unknown 6.6
1944 Female, age 72, unknown 3.6
1815 Male, age 53, unknown 3.3
2407 Male, age 75, both hemispheres 3.1
2667 Female, age 75, unknown 2.9
2273 Male, age 74, both hemispheres 2.5
2224 Female, age 72, unknown 2.3
2316 Male, age 76, right hemisphere 1.8
2825 Male, age 18, unknown 1.8
Red nucleus
nTPM: 2.5
2725 Female, age 75, unknown 3.7
2588 Male, age 74, left hemisphere 3.1
1904 Male, age 53, unknown 2.8
2785 Male, age 18, unknown 2.8
2584 Male, age 75, left hemisphere 2.7
2823 Male, age 76, right hemisphere 2.7
1865 Male, age 51, unknown 2.4
1821 Female, age 72, unknown 2.1
1954 Female, age 42, unknown 2.1
2503 Female, age 72, unknown 2.1
2227 Male, age 72, unknown 1.8
2769 Male, age 72, unknown 1.6
Substantia nigra
nTPM: 2.4
2583 Male, age 75, right hemisphere 3.1
2241 Male, age 72, unknown 3.0
1916 Female, age 42, unknown 2.8
2590 Female, age 75, unknown 2.7
1889 Female, age 72, unknown 2.5
2665 Male, age 74, both hemispheres 2.5
1941 Male, age 53, unknown 2.2
1851 Male, age 51, unknown 2.0
2409 Female, age 72, unknown 1.8
2699 Male, age 18, unknown 1.7
Superior colliculus
nTPM: 2.8
2261 Male, age 18, unknown 5.2
2087 Female, age 72, unknown 4.1
1895 Male, age 76, right hemisphere 3.1
2587 Male, age 74, left hemisphere 2.6
1796 Male, age 53, unknown 2.5
2664 Male, age 75, both hemispheres 2.5
1913 Female, age 42, unknown 2.4
2668 Female, age 75, unknown 2.2
1995 Male, age 72, unknown 2.1
1839 Male, age 51, unknown 1.8
Ventral tegmental area
nTPM: 2.4
2410 Female, age 72, unknown 3.2
2021 Male, age 53, unknown 2.8
2218 Male, age 76, both hemispheres 2.5
1915 Female, age 42, unknown 2.3
2223 Female, age 72, unknown 2.0
1942 Male, age 51, unknown 1.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.1
GTEx sample id Sample description nTPM
2.43.13.80.45.80.00.51.01.52.02.53.03.54.04.55.05.56.0
Brain - Substantia nigra
Average nTPM: 3.1
Samples: 183

Max nTPM: 6.3
Min nTPM: 0.0
Std nTPM: 1.1
Median nTPM: 3.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 6.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 6.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 5.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 5.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 5.6
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 5.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 5.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 5.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 5.4
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 5.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 5.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.7
FF:10158-103A5 76 years, female 26.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.0
Mouse sample Sample description nTPM
11.412.112.710.613.0012345678910111213
 		Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.6
Sample A Male 10.6
Sample B Male 12.6
Sample C Female 13.0
Sample D Female 11.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69626717 Antisense, RP_050428_01_B12, Mouse strain C57BL/6J (56 days, male) 0.1

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