BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:4.9 nTPM
HPA Brain:3.5 nTPM
GTEx:4.9 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Mouse:11.5 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200nCPM

CAUDATE - Antibody stainingi
Antibody HPA004691
Glial cells High
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 3.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.0
1857 Female, age 85, left hemisphere 3.8
1854 Male, age 80, left hemisphere 3.2
2290 Female, age 72, unknown 3.2
2846 Female, age 79, unknown 3.1
2288 Male, age 75, left hemisphere 3.0
1781 Male, age 74, unknown 2.9
2289 Male, age 61, right hemisphere 2.6
2481 Female, age 94, left hemisphere 2.5
Globus pallidus, externus
nTPM: 2.5
2395 Male, age 75, both hemispheres 3.5
2567 Female, age 72, unknown 2.4
2646 Male, age 61, right hemisphere 2.4
1996 Male, age 80, right hemisphere 2.2
2772 Female, age 79, unknown 2.0
Globus pallidus, internus
nTPM: 2.7
2037 Male, age 80, right hemisphere 3.5
2111 Female, age 85, right hemisphere 3.0
2778 Female, age 91, both hemispheres 2.7
2287 Male, age 75, right hemisphere 2.6
2483 Female, age 94, right hemisphere 2.6
2566 Female, age 72, unknown 2.5
1818 Male, age 74, unknown 2.2
Nucleus accumbens
nTPM: 3.3
1856 Female, age 91, right hemisphere 4.0
2824 Male, age 61, right hemisphere 3.8
2391 Female, age 94, left hemisphere 3.6
1783 Male, age 74, unknown 3.4
2698 Female, age 72, unknown 3.1
1806 Female, age 85, left hemisphere 2.8
2286 Male, age 75, left hemisphere 2.8
2732 Male, age 80, right hemisphere 2.7
Nucleus basalis of Meynert
nTPM: 2.6
2393 Male, age 80, right hemisphere 3.0
2484 Female, age 94, left hemisphere 2.8
2569 Male, age 61, both hemispheres 2.4
2821 Male, age 75, both hemispheres 2.4
Nucleus of the diagonal band
nTPM: 3.4
2195 Female, age 85, both hemispheres 3.8
2775 Male, age 80, right hemisphere 3.7
2029 Male, age 61, right hemisphere 3.6
1812 Female, age 91, both hemispheres 3.2
1979 Male, age 74, unknown 2.6
Putamen
nTPM: 3.1
1829 Male, age 74, unknown 3.6
1838 Male, age 80, right hemisphere 3.6
2466 Female, age 79, unknown 3.6
1937 Female, age 91, right hemisphere 3.2
2482 Female, age 94, left hemisphere 2.7
2489 Female, age 72, unknown 2.6
2647 Male, age 75, left hemisphere 2.2
Septal nuclei
nTPM: 3.1
2009 Female, age 91, both hemispheres 3.4
1960 Male, age 74, unknown 3.2
2031 Female, age 72, unknown 3.2
2629 Female, age 94, right hemisphere 3.1
2394 Male, age 61, left hemisphere 3.0
2199 Male, age 80, right hemisphere 2.9
2059 Female, age 85, both hemispheres 2.7
Stria terminalis, bed nucleus
nTPM: 3.5
2486 Female, age 94, both hemispheres 3.7
1974 Female, age 91, both hemispheres 3.5
2201 Male, age 74, unknown 3.4

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 4.9
GTEx sample id Sample description nTPM
2.73.44.60.57.101234567891011
Brain - Caudate (basal ganglia)
Average nTPM: 3.7
Samples: 300

Max nTPM: 11.8
Min nTPM: 0.5
Std nTPM: 1.5
Median nTPM: 3.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 11.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 10.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 8.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 8.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 8.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 8.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 7.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 7.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 7.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 7.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 6.9
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2.94.96.60.010.5012345678910
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.9
Samples: 285

Max nTPM: 10.5
Min nTPM: 0.0
Std nTPM: 2.3
Median nTPM: 4.9
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 10.5
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 10.4
GTEX-1R9K4-0011-R6a-SM-F3K57 60-69 years, male 10.0
GTEX-1R9PO-0011-R6a-SM-F3415 60-69 years, female 9.9
GTEX-RNOR-0011-R6A-SM-GRR2T 50-59 years, female 9.9
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 9.8
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 9.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 9.3
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 9.3
GTEX-11GS4-0011-R6a-SM-GINAG 60-69 years, male 9.2
GTEX-11GSO-0011-R6a-SM-GJ3RC 60-69 years, male 9.1
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Brain - Putamen (basal ganglia)
Average nTPM: 3.6
Samples: 254

Max nTPM: 8.3
Min nTPM: 0.0
Std nTPM: 1.4
Median nTPM: 3.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 8.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 8.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 7.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 7.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 7.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 7.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 6.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 6.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 6.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 6.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 6.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.5
FF:10164-103B2 76 years, female 41.5
Nucleus accumbens
Scaled Tags Per Million: 26.0
FF:10037-101F1 23-56 years, mixed 26.0
Putamen
Scaled Tags Per Million: 42.9
FF:10176-103C5 60 years, female 42.9
Globus pallidus
Scaled Tags Per Million: 33.4
FF:10175-103C4 60 years, female 38.4
FF:10161-103A8 76 years, female 28.5

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 11.5
Mouse sample Sample description nTPM
11.111.311.810.912.40123456789101112
 		Caudate putamen
nTPM: 11.5
Samples: 4

Max nTPM: 12.4
Min nTPM: 10.9
Sample A Male 10.9
Sample B Male 11.6
Sample C Female 11.1
Sample D Female 12.4
11.311.411.511.011.601234567891011
 		Septum
nTPM: 11.4
Samples: 4

Max nTPM: 11.6
Min nTPM: 11.0
Sample A Male 11.0
Sample B Male 11.5
Sample C Female 11.6
Sample D Female 11.4
10.711.311.89.712.20123456789101112
 		Ventral forebrain
nTPM: 11.1
Samples: 4

Max nTPM: 12.2
Min nTPM: 9.7
Sample A Male 11.0
Sample B Male 12.2
Sample C Female 9.7
Sample D Female 11.6

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69626717 Antisense, RP_050428_01_B12, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
69626717 Antisense, RP_050428_01_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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