HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:3.4 nTPM
HPA Brain:3.4 nTPM
GTEx:3.4 nTPM
FANTOM5:32.2 Scaled Tags Per Million
Mouse:12.6 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004691
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 3.4
Sample id Sample description nTPM
Hippocampus
nTPM: 2.8
1911 Female, age 85, right hemisphere 3.1
2148 Female, age 91, left hemisphere 2.9
2529 Female, age 94, left hemisphere 2.8
1855 Male, age 76, left hemisphere 2.7
2621 Female, age 67, right hemisphere 2.6
1898 Male, age 80, left hemisphere 2.4
Dentate gyrus
nTPM: 3.2
2531 Female, age 67, both hemispheres 3.7
1927 Female, age 91, both hemispheres 3.3
2246 Female, age 85, both hemispheres 3.2
2010 Male, age 76, both hemispheres 3.0
2530 Female, age 94, left hemisphere 3.0
2528 Male, age 74, both hemispheres 2.8
Entorhinal gyrus
nTPM: 3.0
1938 Female, age 85, left hemisphere 3.4
2686 Male, age 75, right hemisphere 3.3
1787 Male, age 76, left hemisphere 2.9
2613 Female, age 94, left hemisphere 2.9
2764 Male, age 80, right hemisphere 2.7
2117 Female, age 91, right hemisphere 2.5
Hippocampus, CA1
nTPM: 3.4
2045 Male, age 76, both hemispheres 4.4
1873 Female, age 85, both hemispheres 3.5
2749 Male, age 80, left hemisphere 3.2
2082 Female, age 91, right hemisphere 3.1
2527 Male, age 74, both hemispheres 2.9
Hippocampus, CA2
nTPM: 3.0
2113 Female, age 91, right hemisphere 3.7
1892 Male, age 76, both hemispheres 3.4
1940 Female, age 85, left hemisphere 3.3
2249 Male, age 74, both hemispheres 2.9
2437 Female, age 94, left hemisphere 2.4
1963 Male, age 80, left hemisphere 2.3
Hippocampus, CA3
nTPM: 3.1
1891 Female, age 85, both hemispheres 3.3
2620 Female, age 94, left hemisphere 3.2
2861 Female, age 67, both hemispheres 3.2
1867 Male, age 76, both hemispheres 3.0
2137 Male, age 80, left hemisphere 2.9
2436 Male, age 74, both hemispheres 2.8
Parahippocampal cortex
nTPM: 3.0
2693 Female, age 94, both hemispheres 3.5
2018 Male, age 76, both hemispheres 3.4
1850 Male, age 80, both hemispheres 3.3
1933 Female, age 85, both hemispheres 3.2
2532 Female, age 72, left hemisphere 3.1
2245 Female, age 91, both hemispheres 3.0
1990 Female, age 91, right hemisphere 2.9
2250 Female, age 67, right hemisphere 2.8
2622 Female, age 67, right hemisphere 2.7
2692 Male, age 74, both hemispheres 2.4
Perirhinal gyrus
nTPM: 3.1
1841 Female, age 85, right hemisphere 4.2
2848 Male, age 76, right hemisphere 3.0
1847 Female, age 91, left hemisphere 2.9
1794 Male, age 80, right hemisphere 2.8
2521 Female, age 94, right hemisphere 2.5
Subiculum
nTPM: 2.9
2042 Male, age 76, both hemispheres 3.3
1901 Male, age 80, both hemispheres 3.2
2729 Female, age 91, right hemisphere 3.0
1977 Female, age 85, both hemispheres 2.7
2438 Female, age 94, left hemisphere 2.7
2619 Male, age 74, both hemispheres 2.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 3.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 3.4
Samples: 255

Max nTPM: 8.2
Min nTPM: 0.6
Std nTPM: 1.3
Median nTPM: 3.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 8.2
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 8.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 7.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 7.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 6.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 6.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 6.7
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 6.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 6.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 6.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 6.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 32.2
FF:10169-103B7 60 years, female 33.2
FF:10153-102I9 76 years, female 31.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 12.6
Mouse sample Sample description nTPM
11.111.812.610.713.3012345678910111213
 		Entorhinal cortex
nTPM: 11.9
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.7
Sample A Male 10.7
Sample B Male 13.3
Sample C Female 12.4
Sample D Female 11.2
12.512.612.712.512.70123456789101112
 		Hippocampal formation
nTPM: 12.6
Samples: 4

Max nTPM: 12.7
Min nTPM: 12.5
Sample A Male 12.5
Sample B Male 12.7
Sample C Female 12.7
Sample D Female 12.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
69626717 Antisense, RP_050428_01_B12, Mouse strain C57BL/6J (56 days, male) 0.6

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