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                                          • PRKCD
                                          TISSUE PRIMARY DATA VAGINA Show tissue menu
                                          ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
                                          DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
                                          NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
                                          SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                          ANTIBODIES
                                          AND
                                          VALIDATION
                                          Dictionary
                                          Vagina
                                          Tissue proteome
                                          Vagina
                                          Tissue methods
                                          VAGINA - Expression summary
                                          Protein expression
                                          Vaginai

                                          On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                          h
                                          m
                                          l
                                          n
                                          Squamous epithelial cells: Low
                                          RNA expressioni

                                          A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

                                          Scroll down to view mRNA expression data in more detail.

                                          Consensus:21.6 nTPM
                                          GTEx:21.6 nTPM
                                          FANTOM5:30.4 Scaled Tags Per Million

                                          VAGINA - Antibody stainingi

                                          Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

                                          Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

                                          Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

                                          Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

                                          Antibody HPA001863Antibody HPA001890Antibody CAB010469Antibody CAB013225
                                          Squamous epithelial cells Not detectedNot detectedLowMedium





                                          VAGINA - GTEx RNA-seqi

                                          RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                          Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

                                          Max subtype nTPMi

                                          Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                          21.6
                                          GTEx sample id Sample description nTPM
                                          15.019.627.56.045.9051015202530354045
                                          15.019.627.56.045.9051015202530354045
                                          Vagina
                                          Average nTPM: 21.6
                                          Samples: 170

                                          Max nTPM: 47.1
                                          Min nTPM: 6.0
                                          Std nTPM: 8.9
                                          Median nTPM: 19.6
                                          GTEX-11I78-2026-SM-5987C 50-59 years, female 47.1
                                          GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 45.9
                                          GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 44.0
                                          GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 40.9
                                          GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 40.8
                                          GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 39.6
                                          GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 39.3
                                          GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 38.9
                                          GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 38.5
                                          GTEX-132AR-1626-SM-5EGHP 50-59 years, female 37.8
                                          GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 37.7
                                          GTEX-1399S-2326-SM-5K7YV 30-39 years, female 37.1
                                          GTEX-131XG-2126-SM-5DUXG 50-59 years, female 37.0
                                          GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 37.0
                                          GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 35.2
                                          GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 35.0
                                          GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 34.9
                                          GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 34.4
                                          GTEX-11DXX-1726-SM-5H11T 60-69 years, female 34.1
                                          GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 33.9
                                          GTEX-PWCY-1726-SM-48TD3 20-29 years, female 33.8
                                          GTEX-14PJ6-1626-SM-6872D 60-69 years, female 33.5
                                          GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 33.5
                                          GTEX-ZXES-0626-SM-5E45P 30-39 years, female 33.2
                                          GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 32.8
                                          GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 32.5
                                          GTEX-Q734-1426-SM-DTXFX 40-49 years, female 32.4
                                          GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 32.2
                                          GTEX-14H4A-2426-SM-664OQ 40-49 years, female 31.9
                                          GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 31.3
                                          GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 31.0
                                          GTEX-S4UY-1026-SM-4AD53 40-49 years, female 29.9
                                          GTEX-PWN1-2526-SM-48TDS 40-49 years, female 29.5
                                          GTEX-16NGA-1626-SM-72D6M 40-49 years, female 29.3
                                          GTEX-14PKU-1326-SM-6871B 40-49 years, female 29.0
                                          GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 29.0
                                          GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 28.9
                                          GTEX-TML8-1126-SM-4DXSS 40-49 years, female 28.8
                                          GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 28.8
                                          GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 28.2
                                          GTEX-14JG6-0726-SM-69LQH 30-39 years, female 28.0
                                          GTEX-1C475-0526-SM-793AC 40-49 years, female 28.0
                                          GTEX-RU1J-1426-SM-46MUV 20-29 years, female 27.5
                                          GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 27.4
                                          GTEX-S341-1226-SM-4AD5S 40-49 years, female 27.1
                                          GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 26.8
                                          GTEX-PX3G-2526-SM-48TZV 20-29 years, female 26.8
                                          GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 26.7
                                          GTEX-1CAMS-2326-SM-793CR 40-49 years, female 26.2
                                          GTEX-1399U-1526-SM-5J2N7 50-59 years, female 26.1
                                          GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 25.9
                                          GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 25.8
                                          GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 25.5
                                          GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 24.9
                                          GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 24.9
                                          GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 24.8
                                          GTEX-145ME-1426-SM-5RQJS 40-49 years, female 24.5
                                          GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 24.1
                                          GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 23.9
                                          GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 23.6
                                          GTEX-P4PP-2526-SM-3P61P 30-39 years, female 23.4
                                          GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 23.3
                                          GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 23.3
                                          GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 23.2
                                          GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 23.1
                                          GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 23.0
                                          GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 23.0
                                          GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 22.9
                                          GTEX-QCQG-1226-SM-48U23 50-59 years, female 22.8
                                          GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 22.7
                                          GTEX-13D11-1326-SM-5IJFY 50-59 years, female 22.5
                                          GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 22.2
                                          GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 21.8
                                          GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 21.6
                                          GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 21.6
                                          GTEX-S4P3-1126-SM-4AD52 50-59 years, female 21.4
                                          GTEX-11TTK-2726-SM-5GU58 60-69 years, female 21.3
                                          GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 20.8
                                          GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 20.5
                                          GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 20.4
                                          GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 20.4
                                          GTEX-146FR-2426-SM-5NQAU 60-69 years, female 20.2
                                          GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 20.2
                                          GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 20.1
                                          GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 19.6
                                          GTEX-1117F-2526-SM-5GZY6 60-69 years, female 19.5
                                          GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 19.5
                                          GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 19.4
                                          GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 19.4
                                          GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 19.3
                                          GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 19.1
                                          GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 19.1
                                          GTEX-14A5I-2726-SM-5MR84 50-59 years, female 19.0
                                          GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 18.6
                                          GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 18.6
                                          GTEX-16NPV-2526-SM-6M483 50-59 years, female 18.5
                                          GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 18.3
                                          GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 18.2
                                          GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 18.1
                                          GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 17.9
                                          GTEX-11P81-2126-SM-5HL6N 30-39 years, female 17.8
                                          GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 17.8
                                          GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 17.8
                                          GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 17.7
                                          GTEX-13N11-1526-SM-5L3FL 50-59 years, female 17.6
                                          GTEX-113JC-1926-SM-5N9GE 50-59 years, female 17.3
                                          GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 17.2
                                          GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 17.1
                                          GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 16.8
                                          GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 16.6
                                          GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 16.5
                                          GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 16.4
                                          GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 16.4
                                          GTEX-147F3-1526-SM-5MR7L 50-59 years, female 16.3
                                          GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 16.3
                                          GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 16.3
                                          GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 16.0
                                          GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 16.0
                                          GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 15.8
                                          GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 15.7
                                          GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 15.7
                                          GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 15.5
                                          GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 15.4
                                          GTEX-15DYW-2926-SM-6PANA 60-69 years, female 15.1
                                          GTEX-RWS6-1726-SM-47JXP 60-69 years, female 15.1
                                          GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 15.1
                                          GTEX-1LGRB-2126-SM-COH48 50-59 years, female 15.0
                                          GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 15.0
                                          GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 14.9
                                          GTEX-131YS-2426-SM-5J2OD 60-69 years, female 14.7
                                          GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 14.5
                                          GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 14.2
                                          GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 14.0
                                          GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 13.7
                                          GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 13.7
                                          GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 13.7
                                          GTEX-QDT8-2526-SM-48TYX 30-39 years, female 13.6
                                          GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 13.1
                                          GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 12.9
                                          GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 12.9
                                          GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 12.9
                                          GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 12.9
                                          GTEX-14PJM-2926-SM-69LOE 50-59 years, female 12.8
                                          GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 12.7
                                          GTEX-T2IS-1926-SM-4DM74 20-29 years, female 12.6
                                          GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 12.2
                                          GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 12.1
                                          GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 11.9
                                          GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 11.9
                                          GTEX-RNOR-2526-SM-F21KT 50-59 years, female 11.9
                                          GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 11.5
                                          GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 11.2
                                          GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 11.2
                                          GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 11.1
                                          GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 10.4
                                          GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 10.3
                                          GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 10.3
                                          GTEX-145LS-2526-SM-5TDC9 60-69 years, female 10.2
                                          GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 10.0
                                          GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 10.0
                                          GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 9.8
                                          GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 9.4
                                          GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 9.3
                                          GTEX-183WM-2126-SM-7LG4I 70-79 years, female 9.1
                                          GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 8.2
                                          GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 8.1
                                          GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 7.9
                                          GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 7.9
                                          GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 7.4
                                          GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 6.0
                                          Show allShow less

                                          VAGINA - FANTOM5 CAGEi

                                          RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                          Max subtype Scaled Tags Per Millioni

                                          Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

                                          30.4
                                          FANTOM5 sample id Sample description Scaled Tags Per Million
                                          Vagina
                                          Scaled Tags Per Million: 30.4
                                          FF:10204-103F6 68 years, female 30.4

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