MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.8 nTPM
HPA Brain:21.0 nTPM
GTEx:6.8 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:19.3 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells020406080100120nCPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 21.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.9
2666 Male, age 74, left hemisphere 17.9
2586 Male, age 75, left hemisphere 15.2
1833 Male, age 53, unknown 13.2
2219 Male, age 76, both hemispheres 12.0
2828 Female, age 72, unknown 11.5
1870 Female, age 42, unknown 10.4
1827 Male, age 72, unknown 10.3
1830 Male, age 51, unknown 10.0
2411 Female, age 72, unknown 9.9
2019 Male, age 18, unknown 8.2
Dorsal raphe nucleus
nTPM: 15.0
2016 Female, age 72, unknown 16.2
2047 Male, age 72, unknown 16.2
2750 Male, age 76, both hemispheres 15.0
1828 Male, age 53, unknown 13.9
2298 Female, age 72, unknown 13.6
Inferior colliculus
nTPM: 9.2
1890 Male, age 53, unknown 12.7
2097 Female, age 72, unknown 8.5
2849 Male, age 72, unknown 8.0
1848 Female, age 42, unknown 7.5
Median raphe nucleus
nTPM: 13.2
2220 Male, age 76, midline 13.2
Periaquaductal grey, anterior
nTPM: 13.1
1795 Male, age 51, unknown 16.3
2502 Female, age 75, unknown 13.1
1947 Male, age 18, unknown 10.1
Periaquaductal grey, dorsal
nTPM: 13.6
1831 Male, age 72, unknown 20.1
2850 Male, age 76, both hemispheres 15.0
1840 Male, age 53, unknown 10.2
2464 Female, age 72, unknown 9.2
Periaquaductal grey, lateral
nTPM: 17.1
2053 Male, age 18, unknown 19.6
2272 Male, age 74, both hemispheres 18.3
2140 Male, age 76, both hemispheres 13.3
Pretectal area
nTPM: 17.6
1816 Male, age 51, unknown 36.0
1944 Female, age 72, unknown 27.5
2407 Male, age 75, both hemispheres 21.8
2007 Male, age 72, unknown 17.9
2316 Male, age 76, right hemisphere 16.8
1815 Male, age 53, unknown 16.5
2273 Male, age 74, both hemispheres 16.2
2667 Female, age 75, unknown 13.3
2825 Male, age 18, unknown 11.2
2224 Female, age 72, unknown 8.8
1817 Female, age 42, unknown 7.9
Red nucleus
nTPM: 13.4
1904 Male, age 53, unknown 20.1
2725 Female, age 75, unknown 16.7
2584 Male, age 75, left hemisphere 16.4
2588 Male, age 74, left hemisphere 14.3
2769 Male, age 72, unknown 14.1
2823 Male, age 76, right hemisphere 13.2
1865 Male, age 51, unknown 13.0
2503 Female, age 72, unknown 13.0
2227 Male, age 72, unknown 12.0
1954 Female, age 42, unknown 10.6
2785 Male, age 18, unknown 9.1
1821 Female, age 72, unknown 8.7
Substantia nigra
nTPM: 21.0
1916 Female, age 42, unknown 31.4
2590 Female, age 75, unknown 27.1
2409 Female, age 72, unknown 25.8
2665 Male, age 74, both hemispheres 25.6
2699 Male, age 18, unknown 22.4
2583 Male, age 75, right hemisphere 19.3
2241 Male, age 72, unknown 16.6
1851 Male, age 51, unknown 16.3
1941 Male, age 53, unknown 13.1
1889 Female, age 72, unknown 12.4
Superior colliculus
nTPM: 17.2
2261 Male, age 18, unknown 41.9
2087 Female, age 72, unknown 23.6
1913 Female, age 42, unknown 19.8
2664 Male, age 75, both hemispheres 18.2
2587 Male, age 74, left hemisphere 14.4
1995 Male, age 72, unknown 12.8
1796 Male, age 53, unknown 12.1
2668 Female, age 75, unknown 10.6
1895 Male, age 76, right hemisphere 9.6
1839 Male, age 51, unknown 8.8
Ventral tegmental area
nTPM: 16.5
1915 Female, age 42, unknown 19.3
2021 Male, age 53, unknown 17.7
2410 Female, age 72, unknown 17.4
2218 Male, age 76, both hemispheres 16.4
1942 Male, age 51, unknown 14.3
2223 Female, age 72, unknown 14.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.8
GTEx sample id Sample description nTPM
3.55.69.30.417.802468101214161820222426
Brain - Substantia nigra
Average nTPM: 6.8
Samples: 183

Max nTPM: 26.1
Min nTPM: 0.4
Std nTPM: 4.6
Median nTPM: 5.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 26.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 22.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 21.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 19.2
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 18.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 17.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 17.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 16.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 15.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 15.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.0
FF:10158-103A5 76 years, female 24.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.0
Samples: 4

Max nTPM: 14.7
Min nTPM: 10.6
Sample A Female 10.6
Sample B Female 14.7
Sample C Male 13.6
Sample D Male 13.1
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 14.3
Min nTPM: 6.9
Sample A Female 14.3
Sample B Female 11.2
Sample C Male 6.9
Sample D Male 9.7
Periaqueductal gray
nTPM: 13.6
Samples: 3

Max nTPM: 16.5
Min nTPM: 12.1
Sample B Female 12.1
Sample C Male 16.5
Sample D Male 12.2
8.110.612.66.213.0012345678910111213
 		Superior colliculi
nTPM: 10.1
Samples: 4

Max nTPM: 13.0
Min nTPM: 6.2
Sample A Female 12.4
Sample B Female 13.0
Sample C Male 6.2
Sample D Male 8.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.3
Mouse sample Sample description nTPM
16.321.124.18.726.202468101214161820222426
 		Midbrain
nTPM: 19.3
Samples: 4

Max nTPM: 26.2
Min nTPM: 8.7
Sample A Male 23.4
Sample B Male 8.7
Sample C Female 26.2
Sample D Female 18.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69013272 Antisense, RP_050309_02_B09, Mouse strain C57BL/6J (56 days, male) 0.7
70301274 Antisense, RP_050309_02_B09, Mouse strain C57BL/6J (56 days, male) 0.2

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