BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:11.2 nTPM
HPA Brain:24.6 nTPM
GTEx:11.2 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:21.5 nTPM
Mouse:121.5 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells020406080100120nCPM

CAUDATE - Antibody stainingi
Antibody HPA001863Antibody HPA001890Antibody CAB010469Antibody CAB013225
Glial cells LowNot detectedNot detectedMedium
Neuronal cells MediumNot detectedMediumMedium








BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 24.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.7
2846 Female, age 79, unknown 29.1
1857 Female, age 85, left hemisphere 25.9
2289 Male, age 61, right hemisphere 22.9
2290 Female, age 72, unknown 22.6
1854 Male, age 80, left hemisphere 21.2
1781 Male, age 74, unknown 19.8
2481 Female, age 94, left hemisphere 17.7
2288 Male, age 75, left hemisphere 14.5
Globus pallidus, externus
nTPM: 12.4
2395 Male, age 75, both hemispheres 18.3
2567 Female, age 72, unknown 12.3
1996 Male, age 80, right hemisphere 11.1
2646 Male, age 61, right hemisphere 11.0
2772 Female, age 79, unknown 9.4
Globus pallidus, internus
nTPM: 12.0
2566 Female, age 72, unknown 16.3
2483 Female, age 94, right hemisphere 13.4
2037 Male, age 80, right hemisphere 13.0
2778 Female, age 91, both hemispheres 13.0
2111 Female, age 85, right hemisphere 12.7
1818 Male, age 74, unknown 9.2
2287 Male, age 75, right hemisphere 6.2
Nucleus accumbens
nTPM: 19.4
1783 Male, age 74, unknown 27.7
1856 Female, age 91, right hemisphere 26.0
1806 Female, age 85, left hemisphere 23.5
2824 Male, age 61, right hemisphere 21.6
2698 Female, age 72, unknown 18.1
2732 Male, age 80, right hemisphere 15.7
2391 Female, age 94, left hemisphere 12.4
2286 Male, age 75, left hemisphere 10.1
Nucleus basalis of Meynert
nTPM: 18.5
2484 Female, age 94, left hemisphere 22.1
2821 Male, age 75, both hemispheres 20.6
2393 Male, age 80, right hemisphere 18.9
2569 Male, age 61, both hemispheres 12.4
Nucleus of the diagonal band
nTPM: 23.5
1979 Male, age 74, unknown 28.8
2029 Male, age 61, right hemisphere 24.3
2195 Female, age 85, both hemispheres 23.5
1812 Female, age 91, both hemispheres 21.3
2775 Male, age 80, right hemisphere 19.7
Putamen
nTPM: 23.3
2466 Female, age 79, unknown 30.2
1829 Male, age 74, unknown 28.9
1937 Female, age 91, right hemisphere 25.3
2489 Female, age 72, unknown 21.8
1838 Male, age 80, right hemisphere 20.1
2482 Female, age 94, left hemisphere 19.7
2647 Male, age 75, left hemisphere 17.2
Septal nuclei
nTPM: 24.6
1960 Male, age 74, unknown 33.4
2199 Male, age 80, right hemisphere 29.2
2059 Female, age 85, both hemispheres 23.7
2394 Male, age 61, left hemisphere 21.9
2009 Female, age 91, both hemispheres 21.6
2629 Female, age 94, right hemisphere 21.6
2031 Female, age 72, unknown 21.1
Stria terminalis, bed nucleus
nTPM: 16.1
2486 Female, age 94, both hemispheres 19.8
1974 Female, age 91, both hemispheres 19.5
2201 Male, age 74, unknown 9.0

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 11.2
GTEx sample id Sample description nTPM
4.78.414.31.328.405101520253035
Brain - Caudate (basal ganglia)
Average nTPM: 10.5
Samples: 300

Max nTPM: 38.1
Min nTPM: 1.3
Std nTPM: 7.4
Median nTPM: 8.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 38.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 37.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 33.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 30.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 29.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 28.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 28.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 27.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 27.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 27.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 27.5
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5.810.515.20.727.005101520253035
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.2
Samples: 285

Max nTPM: 39.9
Min nTPM: 0.7
Std nTPM: 6.5
Median nTPM: 10.5
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 39.9
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 27.0
GTEX-RNOR-0011-R6A-SM-GRR2T 50-59 years, female 26.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 26.8
GTEX-PVOW-0011-R6A-SM-H6Q8P 40-49 years, male 26.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 25.4
GTEX-1QMI2-0011-R6a-SM-F3K4M 60-69 years, male 25.2
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 25.2
GTEX-1R9PO-0011-R6a-SM-F3415 60-69 years, female 24.9
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 24.1
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 24.0
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3.76.512.21.323.50510152025303540455055
Brain - Putamen (basal ganglia)
Average nTPM: 8.9
Samples: 254

Max nTPM: 55.3
Min nTPM: 1.3
Std nTPM: 6.8
Median nTPM: 6.5
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 55.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 30.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 29.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 28.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 26.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 26.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 25.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 23.5
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 23.4
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 22.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 22.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.7
FF:10164-103B2 76 years, female 19.7
Nucleus accumbens
Scaled Tags Per Million: 23.3
FF:10037-101F1 23-56 years, mixed 23.3
Putamen
Scaled Tags Per Million: 24.5
FF:10176-103C5 60 years, female 24.5
Globus pallidus
Scaled Tags Per Million: 12.3
FF:10161-103A8 76 years, female 16.1
FF:10175-103C4 60 years, female 8.6

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 21.5
Pig sample Sample description nTPM
Caudate
nTPM: 10.6
Samples: 4

Max nTPM: 14.5
Min nTPM: 8.2
Sample A Female 14.5
Sample B Female 11.2
Sample C Male 8.5
Sample D Male 8.2
12.513.516.512.114.40246810121416182022
 		Putamen
nTPM: 15.5
Samples: 4

Max nTPM: 22.7
Min nTPM: 12.1
Sample A Female 14.4
Sample B Female 12.1
Sample C Male 22.7
Sample D Male 12.6
14.614.821.714.414.90510152025303540
 		Septum
nTPM: 21.5
Samples: 4

Max nTPM: 42.2
Min nTPM: 14.4
Sample A Female 14.9
Sample B Female 14.6
Sample C Male 14.4
Sample D Male 42.2
10.611.412.210.612.30123456789101112
 		Ventral pallidum
nTPM: 11.4
Samples: 4

Max nTPM: 12.3
Min nTPM: 10.6
Sample A Female 12.2
Sample B Female 12.3
Sample C Male 10.6
Sample D Male 10.6

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 121.5
Mouse sample Sample description nTPM
5.96.16.35.76.50.00.51.01.52.02.53.03.54.04.55.05.56.06.5
 		Caudate putamen
nTPM: 6.1
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.7
Sample A Male 5.7
Sample B Male 6.3
Sample C Female 6.5
Sample D Female 5.9
107.5127.4141.459.6171.6020406080100120140160
 		Septum
nTPM: 121.5
Samples: 4

Max nTPM: 171.6
Min nTPM: 59.6
Sample A Male 59.6
Sample B Male 171.6
Sample C Female 123.4
Sample D Female 131.3
6.26.67.45.46.70123456789
 		Ventral forebrain
nTPM: 7.0
Samples: 4

Max nTPM: 9.3
Min nTPM: 5.4
Sample A Male 5.4
Sample B Male 6.7
Sample C Female 6.4
Sample D Female 9.3

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
70301274 Antisense, RP_050309_02_B09, Mouse strain C57BL/6J (56 days, male) 1.4
69013272 Antisense, RP_050309_02_B09, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 1.0
70301274 Antisense, RP_050309_02_B09, Mouse strain C57BL/6J (56 days, male) 1.0
69013272 Antisense, RP_050309_02_B09, Mouse strain C57BL/6J (56 days, male) 0.8

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