HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:6.4 nTPM
HPA Brain:27.7 nTPM
GTEx:6.4 nTPM
FANTOM5:14.0 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:20.1 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells020406080100120nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001863Antibody HPA001890Antibody CAB010469Antibody CAB013225
Glial cells LowLowNot detectedLow
Neuronal cells HighNot detectedNot detectedMedium









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 27.7
Sample id Sample description nTPM
Hippocampus
nTPM: 16.6
1855 Male, age 76, left hemisphere 22.2
2621 Female, age 67, right hemisphere 17.9
1898 Male, age 80, left hemisphere 16.6
2529 Female, age 94, left hemisphere 16.1
1911 Female, age 85, right hemisphere 15.4
2148 Female, age 91, left hemisphere 11.1
Dentate gyrus
nTPM: 13.0
2246 Female, age 85, both hemispheres 20.7
2010 Male, age 76, both hemispheres 13.1
1927 Female, age 91, both hemispheres 12.7
2528 Male, age 74, both hemispheres 11.3
2531 Female, age 67, both hemispheres 10.0
2530 Female, age 94, left hemisphere 9.9
Entorhinal gyrus
nTPM: 25.8
1787 Male, age 76, left hemisphere 40.5
2613 Female, age 94, left hemisphere 33.9
1938 Female, age 85, left hemisphere 25.9
2764 Male, age 80, right hemisphere 21.6
2117 Female, age 91, right hemisphere 17.5
2686 Male, age 75, right hemisphere 15.6
Hippocampus, CA1
nTPM: 16.8
2045 Male, age 76, both hemispheres 23.4
2082 Female, age 91, right hemisphere 20.1
2749 Male, age 80, left hemisphere 17.3
2527 Male, age 74, both hemispheres 12.6
1873 Female, age 85, both hemispheres 10.5
Hippocampus, CA2
nTPM: 21.2
1940 Female, age 85, left hemisphere 33.2
2437 Female, age 94, left hemisphere 27.3
1892 Male, age 76, both hemispheres 22.1
2113 Female, age 91, right hemisphere 20.9
2249 Male, age 74, both hemispheres 14.7
1963 Male, age 80, left hemisphere 8.8
Hippocampus, CA3
nTPM: 16.7
1867 Male, age 76, both hemispheres 25.7
2137 Male, age 80, left hemisphere 21.0
1891 Female, age 85, both hemispheres 20.0
2861 Female, age 67, both hemispheres 13.4
2436 Male, age 74, both hemispheres 11.9
2620 Female, age 94, left hemisphere 8.1
Parahippocampal cortex
nTPM: 23.6
2018 Male, age 76, both hemispheres 34.1
2250 Female, age 67, right hemisphere 33.0
1933 Female, age 85, both hemispheres 27.6
2622 Female, age 67, right hemisphere 24.5
2245 Female, age 91, both hemispheres 22.7
1990 Female, age 91, right hemisphere 21.8
2693 Female, age 94, both hemispheres 21.0
1850 Male, age 80, both hemispheres 19.9
2532 Female, age 72, left hemisphere 18.2
2692 Male, age 74, both hemispheres 12.8
Perirhinal gyrus
nTPM: 27.7
1847 Female, age 91, left hemisphere 38.4
2521 Female, age 94, right hemisphere 35.3
1841 Female, age 85, right hemisphere 23.7
1794 Male, age 80, right hemisphere 21.0
2848 Male, age 76, right hemisphere 20.2
Subiculum
nTPM: 21.1
1977 Female, age 85, both hemispheres 28.5
2042 Male, age 76, both hemispheres 21.9
1901 Male, age 80, both hemispheres 20.4
2729 Female, age 91, right hemisphere 19.3
2619 Male, age 74, both hemispheres 18.4
2438 Female, age 94, left hemisphere 18.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 6.4
GTEx sample id Sample description nTPM
3.55.47.80.513.4024681012141618202224
Brain - Hippocampus
Average nTPM: 6.4
Samples: 255

Max nTPM: 25.3
Min nTPM: 0.5
Std nTPM: 4.3
Median nTPM: 5.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 25.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 24.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 20.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 19.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 19.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 18.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 17.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 17.9
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 17.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 17.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 17.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 14.0
FF:10153-102I9 76 years, female 19.8
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 27.1
Pig sample Sample description nTPM
16.921.031.316.150.405101520253035404550
 		Subiculum
nTPM: 27.1
Samples: 4

Max nTPM: 50.4
Min nTPM: 16.1
Sample A Female 50.4
Sample B Female 24.9
Sample C Male 16.1
Sample D Male 17.1
8.08.69.27.89.60123456789
 		Dorsal hippocampus
nTPM: 8.7
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.8
Sample A Female 9.1
Sample B Female 9.6
Sample C Male 8.1
Sample D Male 7.8
6.88.19.66.410.9012345678910
 		Entorhinal cortex
nTPM: 8.4
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.4
Sample A Female 10.9
Sample B Female 7.0
Sample C Male 9.1
Sample D Male 6.4
7.78.38.87.19.30123456789
 		Ventral hippocampus
nTPM: 8.3
Samples: 4

Max nTPM: 9.3
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 8.7
Sample C Male 7.9
Sample D Male 9.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 20.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.2
Samples: 4

Max nTPM: 7.5
Min nTPM: 4.0
Sample A Male 4.2
Sample B Male 4.0
Sample C Female 7.5
Sample D Female 5.0
16.318.622.412.431.0024681012141618202224262830
 		Hippocampal formation
nTPM: 20.1
Samples: 4

Max nTPM: 31.0
Min nTPM: 12.4
Sample A Male 12.4
Sample B Male 19.5
Sample C Female 31.0
Sample D Female 17.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
69013272 Antisense, RP_050309_02_B09, Mouse strain C57BL/6J (56 days, male) 1.0
70301274 Antisense, RP_050309_02_B09, Mouse strain C57BL/6J (56 days, male) 0.7

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