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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPARC is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
755.7
Number of samples
349
Samples
Sample
Description
TPM
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
8390.2
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
5467.6
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
4374.8
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
4347.2
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
4321.3
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
3705.7
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
3688.8
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
3398.7
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
3259.2
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
3192.1
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
3128.5
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
3028.1
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
2883.6
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
2860.7
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
2803.2
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
2779.1
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
2757.9
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
2741.1
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
2496.0
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
2488.0
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
2439.2
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
2380.2
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
2357.9
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
2294.2
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
2260.3
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
2224.0
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
2212.1
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
2183.9
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
2171.0
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
2093.8
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
2092.0
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
2058.2
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
1995.3
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
1981.6
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
1925.8
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
1881.9
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
1854.9
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
1769.1
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
1750.9
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
1710.0
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
1703.4
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
1701.5
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
1697.1
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
1691.8
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
1667.3
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
1652.4
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
1637.6
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
1629.6
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
1617.4
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
1584.9
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
1580.6
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
1551.8
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
1540.9
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
1537.4
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
1502.8
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
1460.9
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
1433.3
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
1423.6
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
1423.1
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
1401.0
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
1400.0
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
1389.3
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
1387.6
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
1357.2
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
1334.8
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
1333.0
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
1327.1
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
1295.8
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
1274.2
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
1232.8
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
1132.5
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
1124.2
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
1099.2
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
1077.3
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
1070.0
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
1069.6
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
1057.0
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
1051.8
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
1019.8
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
1018.5
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
1016.1
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
1014.3
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
995.5
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
992.8
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
954.5
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
954.3
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
947.3
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
943.7
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
939.6
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
915.4
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
902.9
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
894.9
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
891.2
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
844.1
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
844.0
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
833.0
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
818.5
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
816.9
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
809.8
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
800.5
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
798.9
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
798.7
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
787.7
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
779.5
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
770.0
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
769.5
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
765.4
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
755.1
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
733.8
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
718.0
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
710.0
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
709.8
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
698.1
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
686.8
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
673.7
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
673.3
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
668.6
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
665.8
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
663.2
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
662.9
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
658.6
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
640.6
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
632.8
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
631.9
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
627.1
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
625.1
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
618.4
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
615.1
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
612.6
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
611.1
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
587.7
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
579.3
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
565.0
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
562.8
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
557.9
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
555.8
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
545.6
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
545.4
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
543.6
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
540.1
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
537.8
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
536.6
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
523.0
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
519.4
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
518.1
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
511.6
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
505.4
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
497.8
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
497.5
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
491.4
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
485.1
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
477.4
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
476.1
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
472.5
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
469.2
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
462.0
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
461.6
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
459.7
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
454.1
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
453.8
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
451.7
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
447.0
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
435.4
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
435.3
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
429.6
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
427.5
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
426.4
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
423.6
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
421.7
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
421.4
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
419.5
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
418.2
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
416.9
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
414.1
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
413.3
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
412.4
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
407.9
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
402.5
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
400.3
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
397.8
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
397.3
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
393.4
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
387.7
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
387.1
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
384.6
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
378.1
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
371.2
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
370.4
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
367.4
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
364.7
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
360.9
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
359.4
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
357.2
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
353.7
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
349.4
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
348.0
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
347.1
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
345.0
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
344.4
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
340.9
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
339.7
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
334.9
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
330.1
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
327.7
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
320.2
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
318.0
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
315.5
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
309.1
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
304.8
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
304.0
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
302.6
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
301.5
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
296.9
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
295.9
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
294.2
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
289.2
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
278.5
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
272.3
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
268.0
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
266.7
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
265.1
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
263.9
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
261.4
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
260.4
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
255.9
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
252.8
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
252.1
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
250.8
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
248.4
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
247.8
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
244.3
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
244.2
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
237.2
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
237.2
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
236.5
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
236.4
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
235.8
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
230.3
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
229.9
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
228.5
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
226.2
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
225.3
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
223.7
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
222.9
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
215.1
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
208.5
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
208.0
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
203.9
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
201.2
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
200.6
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
196.2
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
194.5
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
193.5
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
192.3
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
190.1
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
189.5
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
189.1
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
188.2
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
185.2
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
184.5
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
183.7
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
183.6
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
179.5
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
175.3
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
174.5
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
170.8
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
168.4
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
167.8
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
166.0
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
164.0
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
161.0
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
160.9
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
160.0
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
158.2
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
158.1
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
156.9
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
156.1
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
154.3
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
148.6
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
143.9
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
138.8
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
137.7
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
137.5
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
137.5
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
135.6
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
135.3
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
133.8
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
132.8
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
131.7
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
131.5
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
130.8
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
130.2
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
127.8
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
125.2
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
123.4
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
122.7
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
120.2
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
118.5
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
118.5
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
115.0
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
113.1
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
112.8
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
111.0
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
109.1
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
107.5
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
105.2
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
104.6
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
100.7
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
99.7
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
95.3
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
93.9
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
91.2
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
90.8
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
88.8
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
88.1
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
84.8
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
84.7
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
83.5
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
83.4
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
83.4
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
83.0
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
81.3
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
80.5
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
80.4
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
79.6
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
79.6
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
78.3
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
76.7
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
75.9
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
69.8
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
65.9
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
64.0
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
62.7
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
60.7
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
59.9
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
59.0
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
57.0
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
51.8
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
48.9
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
47.7
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
45.6
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
44.3
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
44.1
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
43.6
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
37.6
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
28.7
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
27.6
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
26.2
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPARC is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1090.4
Number of samples
81
Samples
Sample
Description
TPM
DO46508
0 years, female, NA, stage:III, dead, 2101 days
5745.9
DO46332
0 years, female, NA, stage:III, dead, 689 days
4899.7
DO46382
0 years, female, NA, stage:IV, dead, 311 days
4726.8
DO46348
0 years, female, NA, stage:IV, dead, 287 days
4001.1
DO46327
0 years, female, NA, stage:III, dead, 184 days
3817.4
DO46340
0 years, female, NA, stage:III, dead, 616 days
3663.2
DO46448
0 years, female, NA, stage:III, dead, 654 days
3048.7
DO46560
0 years, female, NA, stage:IV, dead, 286 days
2472.0
DO46388
0 years, female, NA, stage:III, dead, 413 days
2467.1
DO46334
0 years, female, NA, stage:III, dead, 496 days
2282.8
DO46398
0 years, female, NA, stage:III, alive, 437 days
2258.0
DO46571
0 years, female, NA, stage:III, dead, 243 days
2097.7
DO46364
0 years, female, NA, stage:III, dead, 806 days
2067.3
DO46386
0 years, female, NA, stage:III, dead, 1162 days
2063.5
DO46358
0 years, female, NA, stage:III, dead, 423 days
1898.6
DO46443
0 years, female, NA, stage:III, dead, 2464 days
1878.4
DO46453
0 years, female, NA, stage:III, dead, 3294 days
1807.9
DO46402
0 years, female, NA, stage:III, dead, 511 days
1805.0
DO46344
0 years, female, NA, stage:III, dead, 642 days
1801.5
DO46325
0 years, female, NA, stage:III, dead, 477 days
1800.0
DO46354
0 years, female, NA, stage:III, dead, 843 days
1746.4
DO46392
0 years, female, NA, stage:III, dead, 628 days
1672.3
DO46597
0 years, female, NA, stage:III, dead, 393 days
1600.0
DO46368
0 years, female, NA, stage:III, dead, 2879 days
1558.5
DO46346
0 years, female, NA, stage:III, dead, 1187 days
1311.2
DO46338
0 years, female, NA, stage:III, dead, 596 days
1119.0
DO46551
0 years, female, NA, stage:III, dead, 1055 days
1001.3
DO46566
0 years, female, NA, stage:III, dead, 673 days
991.9
DO46528
0 years, female, NA, stage:III, alive, 6139 days
974.6
DO46336
0 years, female, NA, stage:IV, dead, 664 days
973.9
DO46326
0 years, female, NA, stage:III, dead, 701 days
938.4
DO46408
0 years, female, NA, stage:III, dead, 489 days
847.0
DO46362
0 years, female, NA, stage:III, dead, 1639 days
768.8
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
766.6
DO46533
0 years, female, NA, stage:III, alive, 3667 days
761.3
DO46376
0 years, female, NA, stage:III, dead, 1430 days
726.5
DO46568
0 years, female, NA, stage:III, dead, 320 days
710.8
DO46588
0 years, female, NA, stage:III, dead, 438 days
689.6
DO46378
0 years, female, NA, stage:III, alive, 843 days
687.5
DO46330
0 years, female, NA, stage:III, dead, 684 days
666.4
DO46468
0 years, female, NA, stage:III, alive, 2776 days
644.1
DO46374
0 years, female, NA, stage:III, dead, 1409 days
614.2
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
529.5
DO46436
0 years, female, NA, stage:III, alive, 3193 days
507.3
DO46329
0 years, female, NA, stage:III, dead, 1699 days
499.8
DO46576
0 years, female, NA, stage:III, alive, 133 days
452.0
DO46561
0 years, female, NA, stage:III, dead, 195 days
442.6
DO46350
0 years, female, NA, stage:III, dead, 886 days
420.6
DO46602
0 years, female, NA, stage:III, dead, 205 days
420.0
DO46432
0 years, female, NA, stage:III, alive, 2218 days
391.3
DO46372
0 years, female, NA, stage:III, dead, 1326 days
386.9
DO46606
0 years, female, NA, stage:III, alive, 804 days
384.9
DO46370
0 years, female, NA, stage:III, dead, 1727 days
353.4
DO46463
0 years, female, NA, stage:III, dead, 2451 days
342.6
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
335.9
DO46591
0 years, female, NA, stage:III, dead, 195 days
331.9
DO46493
0 years, female, NA, stage:IV, alive, 839 days
331.4
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
313.9
DO46342
0 years, female, NA, stage:III, dead, 1398 days
312.9
DO46412
0 years, female, NA, stage:III, dead, 597 days
280.6
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
274.3
DO46328
0 years, female, NA, stage:III, dead, 972 days
271.1
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
245.5
DO46384
0 years, female, NA, stage:III, dead, 614 days
225.3
DO46380
0 years, female, NA, stage:III, dead, 1423 days
222.5
DO46366
0 years, female, NA, stage:III, dead, 2054 days
206.7
DO46404
0 years, female, NA, stage:III, dead, 690 days
186.3
DO46400
0 years, female, NA, stage:III, dead, 719 days
184.4
DO46586
0 years, female, NA, stage:III, dead, 1019 days
123.9
DO46396
0 years, female, NA, stage:III, dead, 583 days
123.7
DO46518
0 years, female, NA, stage:III, alive, 2960 days
119.0
DO46538
0 years, female, NA, stage:III, dead, 1527 days
116.4
DO46352
0 years, female, NA, stage:III, dead, 677 days
110.8
DO46333
0 years, female, NA, stage:III, dead, 359 days
100.2
DO46331
0 years, female, NA, stage:III, dead, 612 days
88.5
DO46390
0 years, female, NA, stage:III, dead, 374 days
84.8
DO46356
0 years, female, NA, stage:III, dead, 911 days
83.1
DO46581
0 years, female, NA, stage:III, dead, 408 days
55.1
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
41.1
DO46611
0 years, female, NA, stage:III, dead, 734 days
33.4
DO46546
0 years, female, NA, stage:III, dead, 1889 days
22.8
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OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
1.4
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
1.3
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
1.2
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
1.2
15524912-685a-47ce-a824-567848_D2
Tumor
1.2
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
1.1
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
1.1
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
1.0
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
1.0
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
0.9
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
0.9
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
0.9
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
0.9
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
0.9
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
0.8
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
0.8
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
0.8
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
0.8
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
0.8
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
0.7
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
0.7
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
0.7
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
0.7
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
0.7
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
0.7
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
0.7
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
0.6
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
0.6
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
0.6
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
0.6
285fed94-1495-448e-879b-b55de9_D2
Tumor
0.5
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
0.5
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
0.5
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
0.5
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
0.5
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
0.5
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
0.5
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
0.5
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
0.5
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
0.4
a3a26070-fb84-406a-8280-d555e6_D2
Normal
0.4
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
0.4
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
0.4
10c2d629-0287-4511-ac25-f29031_D2
Tumor
0.4
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
0.4
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
0.4
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
0.3
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
0.3
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
0.3
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
0.3
e9d416e7-f661-400a-896e-388545_D2
Tumor
0.2
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
0.2
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
0.2
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
0.2
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
0.2
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
0.1
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
0.1
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
0.1
1db5574d-aca7-403c-8100-6e705f_D2
Normal
0.1
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
0.1
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
0.1
21efd60f-6a31-4b98-9477-16a905_D2
Normal
0.1
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
0.1
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
0.0
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
0.0
1a10c200-3895-4648-b951-94f99f_D2
Tumor
0.0
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
0.0
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
0.0
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
0.0
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
0.0
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
0.0
2f901c90-617e-46da-9fac-d68369_D2
Tumor
0.0
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
0.0
1772e913-f62e-446a-8cf3-720348_D2
Tumor
-0.1
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
-0.1
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-0.1
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
-0.1
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
-0.1
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
-0.1
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
-0.1
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-0.1
a65d8e76-640f-4341-a561-afbb57_D2
Normal
-0.1
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
-0.1
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-0.1
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
-0.1
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
-0.2
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
-0.2
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
-0.2
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-0.2
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-0.2
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
-0.2
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
-0.2
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
-0.3
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
-0.3
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
-0.3
340a3769-3031-41ae-bb08-a2f696_D2
Normal
-0.3
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
-0.3
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
-0.4
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
-0.4
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
-0.4
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
-0.4
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
-0.5
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
-0.5
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
-0.5
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
-0.6
161317f3-1a39-438e-af45-cd2502_D2
Tumor
-0.6
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
-0.6
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-0.7
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.