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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPARC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
151.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1356.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
948.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
875.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
838.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
814.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
743.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
742.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
721.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
712.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
678.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
670.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
591.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
574.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
523.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
513.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
510.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
499.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
495.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
485.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
465.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
457.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
440.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
428.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
423.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
421.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
417.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
407.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
407.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
401.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
400.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
400.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
378.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
368.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
360.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
358.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
354.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
349.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
335.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
332.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
324.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
319.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
310.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
309.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
303.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
300.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
294.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
293.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
293.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
290.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
289.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
287.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
275.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
275.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
272.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
271.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
259.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
259.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
257.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
256.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
254.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
254.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
248.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
246.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
244.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
242.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
240.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
234.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
233.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
232.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
225.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
224.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
223.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
223.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
221.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
221.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
214.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
213.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
212.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
210.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
209.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
206.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
205.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
201.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
201.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
199.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
199.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
199.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
197.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
195.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
191.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
190.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
189.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
188.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
188.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
186.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
183.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
181.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
180.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
178.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
174.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
171.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
170.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
169.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
169.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
167.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
167.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
165.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
164.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
164.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
162.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
161.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
159.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
158.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
158.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
157.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
155.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
152.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
149.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
149.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
149.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
148.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
147.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
145.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
144.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
144.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
141.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
141.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
140.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
139.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
138.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
134.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
134.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
131.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
131.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
131.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
131.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
131.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
130.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
129.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
129.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
128.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
127.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
127.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
127.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
127.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
126.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
125.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
124.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
121.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
120.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
119.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
118.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
116.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
115.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
115.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
114.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
113.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
111.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
110.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
109.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
109.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
108.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
108.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
107.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
106.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
105.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
105.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
103.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
103.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
103.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
102.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
100.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
100.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
99.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
99.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
99.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
99.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
98.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
98.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
97.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
96.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
96.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
95.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
94.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
94.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
94.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
93.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
93.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
92.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
92.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
92.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
91.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
91.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
90.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
90.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
90.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
90.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
89.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
89.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
89.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
89.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
88.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
87.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
87.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
87.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
84.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
83.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
83.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
83.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
83.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
82.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
82.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
81.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
81.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
81.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
81.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
79.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
78.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
78.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
78.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
74.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
74.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
71.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
70.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
70.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
69.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
68.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
67.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
66.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
66.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
66.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
65.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
65.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
64.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
64.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
64.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
63.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
60.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
60.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
59.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
59.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
59.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
59.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
59.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
58.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
57.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
56.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
55.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
55.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
55.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
55.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
55.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
55.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
54.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
53.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
52.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
50.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
50.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
50.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
49.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
49.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
49.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
48.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
47.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
46.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
46.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
45.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
45.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
44.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
43.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
43.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
43.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
43.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
42.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
41.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
41.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
39.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
39.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
39.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
39.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
38.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
38.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
37.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
37.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
36.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
35.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
35.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
34.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
34.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
33.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
33.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
33.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
29.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
29.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
27.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
25.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPARC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
190.2
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2148.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
1478.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
954.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
879.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
736.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
736.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
717.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
686.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
613.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
585.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
574.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
568.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
535.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
529.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
512.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
506.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
501.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
500.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
493.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
486.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
482.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
478.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
470.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
427.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
406.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
403.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
401.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
397.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
396.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
371.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
365.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
364.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
351.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
344.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
343.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
339.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
335.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
335.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
326.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
322.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
318.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
316.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
313.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
302.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
299.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
298.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
295.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
295.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
285.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
275.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
270.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
265.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
264.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
263.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
256.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
254.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
252.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
251.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
250.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
247.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
246.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
238.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
236.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
235.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
230.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
229.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
227.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
219.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
206.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
205.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
200.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
200.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
193.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
192.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
190.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
187.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
183.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
183.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
183.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
180.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
180.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
177.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
176.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
176.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
172.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
166.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
164.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
162.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
159.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
158.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
157.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
151.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
150.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
149.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
148.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
146.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
138.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
137.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
136.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
136.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
136.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
136.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
134.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
131.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
128.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
126.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
126.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
125.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
125.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
123.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
121.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
117.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
117.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
114.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
113.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
111.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
111.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
110.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
110.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
109.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
107.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
107.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
106.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
106.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
105.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
104.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
102.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
101.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
100.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
99.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
98.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
95.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
95.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
93.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
92.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
92.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
91.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
90.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
89.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
88.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
88.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
87.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
87.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
87.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
86.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
85.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
84.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
83.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
82.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
80.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
79.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
78.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
78.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
76.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
75.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
75.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
73.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
72.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
70.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
70.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
69.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
68.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
68.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
67.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
66.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
66.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
65.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
65.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
64.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
64.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
63.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
63.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
62.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
60.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
60.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
55.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
55.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
54.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
54.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
54.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
50.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
49.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
49.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
48.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
46.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
45.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
45.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
44.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
39.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
35.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
3.1
877
Tumor
1.9
545
Tumor
1.8
671
Tumor
1.8
817
Tumor
1.7
343
Tumor
1.5
697
Tumor
1.3
525
Tumor
1.3
331
Tumor
1.2
455
Tumor
1.2
823
Tumor
1.2
297
Tumor
1.2
943
Tumor
1.2
355
Tumor
1.1
881
Tumor
1.1
975
Tumor
1.0
491
Tumor
1.0
743
Tumor
1.0
981
Tumor
1.0
813
Tumor
1.0
923
Tumor
1.0
311
Tumor
1.0
713
Tumor
1.0
1025
Tumor
0.9
375
Tumor
0.9
363
Tumor
0.9
277
Tumor
0.9
447
Tumor
0.9
745
Tumor
0.9
535
Tumor
0.9
385
Tumor
0.9
421
Tumor
0.9
493
Tumor
0.8
715
Tumor
0.8
917
Tumor
0.8
461
Tumor
0.8
137
Tumor
0.8
145
Tumor
0.7
785
Tumor
0.7
213
Tumor
0.7
861
Tumor
0.7
211
Tumor
0.7
814
Normal
0.7
497
Tumor
0.7
921
Tumor
0.7
185
Tumor
0.6
427
Tumor
0.6
393
Tumor
0.6
395
Tumor
0.6
383
Tumor
0.6
483
Tumor
0.6
965
Tumor
0.5
536
Normal
0.5
492
Normal
0.5
161
Tumor
0.5
1045
Tumor
0.5
883
Tumor
0.5
957
Tumor
0.5
141
Tumor
0.5
515
Tumor
0.5
685
Tumor
0.5
1015
Tumor
0.5
647
Tumor
0.5
367
Tumor
0.4
223
Tumor
0.4
517
Tumor
0.4
261
Tumor
0.4
365
Tumor
0.4
963
Tumor
0.4
695
Tumor
0.4
533
Tumor
0.4
627
Tumor
0.4
433
Tumor
0.4
187
Tumor
0.4
557
Tumor
0.3
983
Tumor
0.3
857
Tumor
0.3
527
Tumor
0.3
977
Tumor
0.2
473
Tumor
0.2
553
Tumor
0.2
391
Tumor
0.2
463
Tumor
0.2
413
Tumor
0.2
327
Tumor
0.2
755
Tumor
0.1
135
Tumor
0.1
937
Tumor
0.1
867
Tumor
0.1
471
Tumor
0.1
523
Tumor
0.1
341
Tumor
0.1
451
Tumor
0.1
615
Tumor
0.1
361
Tumor
0.1
672
Normal
0.1
477
Tumor
0.0
573
Tumor
0.0
387
Tumor
0.0
737
Tumor
0.0
147
Tumor
0.0
967
Tumor
0.0
537
Tumor
0.0
415
Tumor
0.0
665
Tumor
0.0
1013
Tumor
0.0
538
Normal
0.0
913
Tumor
0.0
567
Tumor
0.0
1043
Tumor
0.0
727
Tumor
0.0
498
Normal
0.0
113
Tumor
0.0
368
Normal
-0.1
425
Tumor
-0.1
865
Tumor
-0.1
353
Tumor
-0.1
313
Tumor
-0.1
227
Tumor
-0.1
431
Tumor
-0.1
124
Normal
-0.1
563
Tumor
-0.1
925
Tumor
-0.1
344
Normal
-0.1
526
Normal
-0.1
444
Normal
-0.1
188
Normal
-0.1
873
Tumor
-0.1
915
Tumor
-0.1
721
Tumor
-0.1
214
Normal
-0.1
411
Tumor
-0.2
456
Normal
-0.2
195
Tumor
-0.2
513
Tumor
-0.2
445
Tumor
-0.2
351
Tumor
-0.2
257
Tumor
-0.2
131
Tumor
-0.2
127
Tumor
-0.2
191
Tumor
-0.2
1041
Tumor
-0.2
392
Normal
-0.2
952
Normal
-0.2
284
Normal
-0.2
617
Tumor
-0.2
228
Normal
-0.2
468
Normal
-0.2
554
Normal
-0.2
546
Normal
-0.2
951
Tumor
-0.3
171
Tumor
-0.3
452
Normal
-0.3
357
Tumor
-0.3
467
Tumor
-0.3
192
Normal
-0.3
744
Normal
-0.3
851
Tumor
-0.3
217
Tumor
-0.3
271
Tumor
-0.3
464
Normal
-0.3
874
Normal
-0.3
434
Normal
-0.3
1028
Normal
-0.3
231
Tumor
-0.3
724
Normal
-0.3
635
Tumor
-0.3
816
Normal
-0.3
435
Tumor
-0.3
1021
Tumor
-0.3
878
Normal
-0.3
268
Normal
-0.3
953
Tumor
-0.3
142
Normal
-0.3
212
Normal
-0.3
863
Tumor
-0.3
112
Tumor
-0.3
976
Normal
-0.3
916
Normal
-0.4
524
Normal
-0.4
267
Tumor
-0.4
661
Tumor
-0.4
125
Tumor
-0.4
741
Tumor
-0.4
815
Tumor
-0.4
111
Normal
-0.4
466
Normal
-0.4
146
Normal
-0.4
443
Tumor
-0.4
465
Tumor
-0.4
1031
Tumor
-0.4
966
Normal
-0.4
663
Tumor
-0.4
1027
Tumor
-0.4
366
Normal
-0.5
128
Normal
-0.5
746
Normal
-0.5
777
Tumor
-0.5
114
Normal
-0.5
262
Normal
-0.5
956
Normal
-0.5
138
Normal
-0.5
376
Normal
-0.5
488
Normal
-0.5
218
Normal
-0.5
516
Normal
-0.5
126
Normal
-0.5
924
Normal
-0.5
196
Normal
-0.5
222
Normal
-0.5
474
Normal
-0.5
914
Normal
-0.5
286
Normal
-0.5
666
Normal
-0.5
412
Normal
-0.6
494
Normal
-0.6
641
Tumor
-0.6
662
Normal
-0.6
868
Normal
-0.6
722
Normal
-0.6
518
Normal
-0.6
224
Normal
-0.6
386
Normal
-0.6
911
Tumor
-0.6
136
Normal
-0.6
484
Normal
-0.6
534
Normal
-0.6
364
Normal
-0.6
416
Normal
-0.6
342
Normal
-0.6
123
Tumor
-0.6
362
Normal
-0.6
686
Normal
-0.6
818
Normal
-0.6
664
Normal
-0.6
778
Normal
-0.6
968
Normal
-0.6
571
Tumor
-0.6
148
Normal
-0.6
852
Normal
-0.6
426
Normal
-0.7
186
Normal
-0.7
448
Normal
-0.7
162
Normal
-0.7
423
Tumor
-0.7
428
Normal
-0.7
384
Normal
-0.7
172
Normal
-0.7
312
Normal
-0.7
882
Normal
-0.7
487
Tumor
-0.7
258
Normal
-0.7
446
Normal
-0.7
272
Normal
-0.7
728
Normal
-0.7
574
Normal
-0.7
982
Normal
-0.7
918
Normal
-0.7
354
Normal
-0.7
132
Normal
-0.7
958
Normal
-0.7
221
Tumor
-0.7
738
Normal
-0.7
328
Normal
-0.7
944
Normal
-0.8
436
Normal
-0.8
422
Normal
-0.8
394
Normal
-0.8
356
Normal
-0.8
478
Normal
-0.8
1016
Normal
-0.8
786
Normal
-0.8
424
Normal
-0.8
352
Normal
-0.8
642
Normal
-0.8
862
Normal
-0.8
278
Normal
-0.8
964
Normal
-0.8
396
Normal
-0.8
955
Tumor
-0.8
285
Tumor
-0.8
388
Normal
-0.8
514
Normal
-0.8
648
Normal
-0.8
528
Normal
-0.8
984
Normal
-0.9
696
Normal
-0.9
698
Normal
-0.9
866
Normal
-0.9
742
Normal
-0.9
1044
Normal
-0.9
864
Normal
-0.9
922
Normal
-0.9
414
Normal
-0.9
358
Normal
-0.9
938
Normal
-0.9
481
Tumor
-0.9
232
Normal
-0.9
332
Normal
-0.9
298
Normal
-0.9
572
Normal
-1.0
884
Normal
-1.0
824
Normal
-1.0
472
Normal
-1.0
1046
Normal
-1.0
432
Normal
-1.0
926
Normal
-1.0
1026
Normal
-1.0
568
Normal
-1.0
564
Normal
-1.0
954
Normal
-1.0
723
Tumor
-1.0
558
Normal
-1.1
912
Normal
-1.1
858
Normal
-1.1
482
Normal
-1.1
714
Normal
-1.1
618
Normal
-1.1
716
Normal
-1.2
978
Normal
-1.2
628
Normal
-1.2
1042
Normal
-1.2
314
Normal
-1.2
636
Normal
-1.2
1014
Normal
-1.2
462
Normal
-1.2
1032
Normal
-1.2
1022
Normal
-1.3
616
Normal
-1.3
756
Normal
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.