We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
173.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 121.3
1984
Male, age 76, both hemispheres
191.2
2090
Male, age 80, both hemispheres
115.3
2301
Female, age 85, both hemispheres
95.1
2188
Female, age 91, both hemispheres
83.7
Dorsal cochlear nucleus nTPM: 157.5
2058
Male, age 76, both hemispheres
183.8
2370
Male, age 61, both hemispheres
177.7
2802
Male, age 74, right hemisphere
164.3
2378
Male, age 80, both hemispheres
159.0
2187
Female, age 91, both hemispheres
103.0
Dorsal tegmental nucleus nTPM: 173.9
1936
Male, age 76, left hemisphere
221.7
2358
Male, age 61, both hemispheres
165.0
2083
Male, age 80, both hemispheres
155.6
2326
Male, age 74, both hemispheres
153.3
Dorsolateral tegmental area nTPM: 167.4
2360
Male, age 74, both hemispheres
248.3
2141
Male, age 76, both hemispheres
181.9
2654
Male, age 80, both hemispheres
151.6
2337
Male, age 61, both hemispheres
138.5
2751
Female, age 85, both hemispheres
116.7
Kolliker-Fuse nucleus nTPM: 164.1
2315
Male, age 76, right hemisphere
288.1
2163
Male, age 80, both hemispheres
134.8
2793
Female, age 91, left hemisphere
69.5
Lateral lemniscal nuclei nTPM: 79.2
2169
Male, age 76, both hemispheres
109.2
2746
Female, age 85, left hemisphere
76.8
2036
Male, age 80, both hemispheres
76.1
2453
Male, age 74, right hemisphere
68.8
2320
Female, age 91, left hemisphere
65.0
Lateral parabrachial nucleus nTPM: 140.2
2792
Male, age 76, both hemispheres
214.9
2139
Female, age 85, right hemisphere
139.3
2013
Male, age 80, both hemispheres
132.0
2790
Male, age 61, both hemispheres
74.5
Lateral vestibular nucleus nTPM: 165.1
2311
Male, age 80, both hemispheres
173.0
2184
Male, age 76, both hemispheres
157.1
Locus coeruleus nTPM: 137.4
2123
Female, age 91, both hemispheres
171.4
2317
Female, age 72, unknown
170.7
2788
Male, age 74, unknown
166.7
1980
Male, age 76, both hemispheres
161.8
2014
Male, age 55, unknown
109.0
2162
Male, age 80, both hemispheres
100.0
2720
Male, age 74, both hemispheres
82.2
Medial parabrachial nucleus nTPM: 130.3
2786
Male, age 76, both hemispheres
150.5
2463
Female, age 85, right hemisphere
148.2
2156
Male, age 61, both hemispheres
135.4
2854
Male, age 80, both hemispheres
113.0
2170
Female, age 91, both hemispheres
104.4
Medial periolivary nuclei nTPM: 97.1
2791
Male, age 74, right hemisphere
144.0
2063
Male, age 76, both hemispheres
129.2
2081
Male, age 80, both hemispheres
83.0
2171
Female, age 85, both hemispheres
71.2
2458
Female, age 91, both hemispheres
58.0
Motor facial nucleus nTPM: 93.3
2062
Male, age 76, both hemispheres
135.1
2365
Male, age 74, right hemisphere
121.9
2795
Female, age 91, both hemispheres
110.5
2126
Male, age 61, both hemispheres
87.3
2697
Female, age 85, both hemispheres
60.7
2327
Male, age 80, both hemispheres
44.3
Motor trigeminal nucleus nTPM: 92.2
2309
Male, age 76, both hemispheres
149.7
2335
Male, age 61, both hemispheres
116.4
2079
Male, age 80, both hemispheres
75.7
2560
Male, age 74, both hemispheres
60.8
2321
Female, age 91, both hemispheres
58.3
Nuclei of the trapezoid body nTPM: 88.7
1983
Male, age 76, both hemispheres
137.7
2368
Female, age 91, both hemispheres
82.2
2159
Male, age 61, both hemispheres
79.6
2166
Male, age 80, both hemispheres
77.9
2735
Female, age 85, both hemispheres
66.2
Nucleus raphe magnus nTPM: 78.8
2455
Male, age 74, both hemispheres
121.6
2051
Male, age 76, both hemispheres
112.9
2160
Male, age 61, both hemispheres
78.4
2328
Male, age 80, both hemispheres
74.3
2459
Female, age 91, both hemispheres
58.2
2172
Female, age 85, both hemispheres
27.2
Paramedian reticular nucleus nTPM: 129.6
2052
Male, age 76, both hemispheres
199.0
2057
Male, age 80, both hemispheres
137.2
2313
Male, age 61, both hemispheres
113.0
2050
Female, age 85, both hemispheres
69.3
Pedunculopontine tegmental nucleus nTPM: 164.0
1921
Female, age 85, both hemispheres
207.4
2334
Male, age 80, both hemispheres
143.6
2338
Male, age 61, both hemispheres
141.0
Pontine nuclei nTPM: 74.3
1968
Male, age 76, left hemisphere
98.2
2109
Female, age 72, unknown
88.7
2319
Female, age 91, both hemispheres
86.5
1863
Male, age 55, unknown
84.7
2115
Male, age 80, left hemisphere
73.9
2727
Male, age 61, right hemisphere
61.0
2454
Male, age 74, left hemisphere
56.5
2787
Female, age 85, both hemispheres
45.1
Pontine raphe nucleus nTPM: 132.3
2853
Male, age 76, midline
181.1
2122
Female, age 85, midline
83.4
Posteroventral cochlear nucleus nTPM: 126.2
2371
Male, age 61, both hemispheres
170.0
2070
Male, age 76, both hemispheres
125.8
2752
Female, age 85, both hemispheres
125.6
2341
Male, age 80, both hemispheres
114.6
2135
Female, age 91, both hemispheres
95.1
Principal sensory trigeminal nucleus nTPM: 105.9
2324
Male, age 76, both hemispheres
192.0
2158
Male, age 61, both hemispheres
82.7
2008
Male, age 80, left hemisphere
80.3
2367
Female, age 91, left hemisphere
68.8
Reticular pontine nucleus, caudal nTPM: 79.7
2092
Male, age 76, both hemispheres
136.7
2457
Female, age 91, both hemispheres
69.6
2559
Male, age 74, both hemispheres
62.1
2332
Male, age 80, right hemisphere
50.5
Reticular pontine nucleus, oral nTPM: 118.7
2167
Male, age 76, both hemispheres
171.1
1939
Male, age 80, both hemispheres
163.5
2012
Female, age 85, both hemispheres
97.5
2361
Male, age 74, both hemispheres
84.8
2366
Female, age 91, both hemispheres
76.5
Reticulotegmental nucleus nTPM: 104.9
2325
Male, age 76, both hemispheres
147.2
2333
Male, age 80, both hemispheres
109.1
2322
Female, age 91, both hemispheres
97.4
2452
Male, age 74, both hemispheres
65.8
Spinal trigeminal nucleus, oral nTPM: 138.1
1978
Male, age 76, both hemispheres
192.0
2737
Female, age 85, both hemispheres
142.4
2164
Male, age 80, both hemispheres
80.0
Subcoeruleus area nTPM: 113.1
1958
Male, age 80, both hemispheres
135.3
2369
Female, age 85, left hemisphere
111.6
2089
Male, age 76, left hemisphere
109.0
2451
Male, age 74, both hemispheres
105.4
2323
Female, age 91, left hemisphere
104.3
Superior olive nTPM: 94.1
2364
Male, age 74, right hemisphere
148.4
2020
Male, age 76, both hemispheres
134.4
2329
Male, age 80, right hemisphere
62.8
1875
Female, age 85, both hemispheres
62.4
2561
Female, age 91, both hemispheres
62.3
Ventral periolivary nuclei nTPM: 92.6
2023
Male, age 76, both hemispheres
136.9
2130
Female, age 85, both hemispheres
90.6
2165
Male, age 80, both hemispheres
89.9
2794
Female, age 91, left hemisphere
53.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 100.8
2359
Male, age 61, both hemispheres
142.8
1959
Male, age 76, both hemispheres
121.2
2840
Female, age 85, both hemispheres
97.2
2161
Male, age 80, both hemispheres
95.3
2449
Male, age 74, both hemispheres
81.0
2456
Female, age 91, both hemispheres
67.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
570.7
Pig sample
Sample description
nTPM
Pons nTPM: 570.7
Samples: 4
Max nTPM: 654.2
Min nTPM: 445.0
Sample A
Female
445.0
Sample B
Female
590.3
Sample C
Male
654.2
Sample D
Male
593.3
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
