MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:173.7 nTPM
HPA Brain:304.1 nTPM
GTEx:173.7 nTPM
FANTOM5:592.5 Scaled Tags Per Million
Pig:669.0 nTPM
Mouse:163.3 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 304.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 150.6
2828 Female, age 72, unknown 214.1
1827 Male, age 72, unknown 189.8
1870 Female, age 42, unknown 186.1
1833 Male, age 53, unknown 163.6
2219 Male, age 76, both hemispheres 154.3
2411 Female, age 72, unknown 143.5
2586 Male, age 75, left hemisphere 142.9
1830 Male, age 51, unknown 114.8
2019 Male, age 18, unknown 112.3
2666 Male, age 74, left hemisphere 85.0
Dorsal raphe nucleus
nTPM: 268.8
2298 Female, age 72, unknown 336.7
2016 Female, age 72, unknown 319.6
1828 Male, age 53, unknown 276.9
2047 Male, age 72, unknown 251.9
2750 Male, age 76, both hemispheres 158.8
Inferior colliculus
nTPM: 233.9
1848 Female, age 42, unknown 273.1
2849 Male, age 72, unknown 264.6
2097 Female, age 72, unknown 206.0
1890 Male, age 53, unknown 192.0
Median raphe nucleus
nTPM: 177.8
2220 Male, age 76, midline 177.8
Periaquaductal grey, anterior
nTPM: 227.4
1795 Male, age 51, unknown 262.3
2502 Female, age 75, unknown 211.4
1947 Male, age 18, unknown 208.6
Periaquaductal grey, dorsal
nTPM: 304.1
1840 Male, age 53, unknown 440.7
2850 Male, age 76, both hemispheres 347.7
2464 Female, age 72, unknown 239.9
1831 Male, age 72, unknown 188.1
Periaquaductal grey, lateral
nTPM: 277.5
2140 Male, age 76, both hemispheres 311.8
2053 Male, age 18, unknown 285.8
2272 Male, age 74, both hemispheres 234.8
Pretectal area
nTPM: 238.0
2273 Male, age 74, both hemispheres 377.6
1816 Male, age 51, unknown 311.9
1944 Female, age 72, unknown 287.1
2224 Female, age 72, unknown 274.7
2667 Female, age 75, unknown 263.8
1817 Female, age 42, unknown 227.8
2825 Male, age 18, unknown 209.5
2316 Male, age 76, right hemisphere 207.5
1815 Male, age 53, unknown 183.9
2407 Male, age 75, both hemispheres 142.0
2007 Male, age 72, unknown 132.6
Red nucleus
nTPM: 151.4
1954 Female, age 42, unknown 198.9
1821 Female, age 72, unknown 186.4
2503 Female, age 72, unknown 183.4
2725 Female, age 75, unknown 173.9
1904 Male, age 53, unknown 170.3
2823 Male, age 76, right hemisphere 169.6
2769 Male, age 72, unknown 166.1
2227 Male, age 72, unknown 165.5
1865 Male, age 51, unknown 135.1
2588 Male, age 74, left hemisphere 114.4
2785 Male, age 18, unknown 94.9
2584 Male, age 75, left hemisphere 58.2
Substantia nigra
nTPM: 234.9
2699 Male, age 18, unknown 385.4
1916 Female, age 42, unknown 334.9
2241 Male, age 72, unknown 263.4
2409 Female, age 72, unknown 255.3
1889 Female, age 72, unknown 236.8
1851 Male, age 51, unknown 218.0
2590 Female, age 75, unknown 209.3
2665 Male, age 74, both hemispheres 186.7
1941 Male, age 53, unknown 130.5
2583 Male, age 75, right hemisphere 128.5
Superior colliculus
nTPM: 207.2
2261 Male, age 18, unknown 261.6
2087 Female, age 72, unknown 256.3
1796 Male, age 53, unknown 243.8
1995 Male, age 72, unknown 236.9
1913 Female, age 42, unknown 199.5
2587 Male, age 74, left hemisphere 198.0
1839 Male, age 51, unknown 195.9
2668 Female, age 75, unknown 165.4
1895 Male, age 76, right hemisphere 160.7
2664 Male, age 75, both hemispheres 153.6
Ventral tegmental area
nTPM: 204.1
1915 Female, age 42, unknown 252.7
2410 Female, age 72, unknown 238.6
2021 Male, age 53, unknown 197.7
2218 Male, age 76, both hemispheres 194.2
1942 Male, age 51, unknown 181.7
2223 Female, age 72, unknown 160.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 173.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 173.7
Samples: 139

Max nTPM: 811.1
Min nTPM: 14.4
Std nTPM: 122.3
Median nTPM: 145.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 811.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 772.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 680.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 563.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 405.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 395.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 382.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 368.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 340.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 327.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 327.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 592.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 592.5
FF:10158-103A5 76 years, female 592.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 669.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 490.7
Samples: 4

Max nTPM: 606.1
Min nTPM: 388.2
Sample A Female 560.6
Sample B Female 407.7
Sample C Male 606.1
Sample D Male 388.2
Midbrain
nTPM: 495.1
Samples: 4

Max nTPM: 687.3
Min nTPM: 388.2
Sample A Female 429.3
Sample B Female 687.3
Sample C Male 475.4
Sample D Male 388.2
Periaqueductal gray
nTPM: 669.0
Samples: 3

Max nTPM: 763.4
Min nTPM: 537.5
Sample B Female 706.1
Sample C Male 763.4
Sample D Male 537.5
Superior colliculi
nTPM: 376.9
Samples: 4

Max nTPM: 453.9
Min nTPM: 213.1
Sample A Female 453.9
Sample B Female 213.1
Sample C Male 411.0
Sample D Male 429.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 163.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.3
Samples: 4

Max nTPM: 169.6
Min nTPM: 158.9
Sample A Male 169.6
Sample B Male 158.9
Sample C Female 159.9
Sample D Female 164.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
77620233 Antisense, RP_070129_03_B08, Mouse strain C57BL/6J (56 days, male) 0.9

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