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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMGN2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
213.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
839.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
744.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
709.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
686.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
633.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
629.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
596.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
585.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
570.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
547.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
529.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
520.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
517.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
504.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
501.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
499.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
498.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
467.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
466.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
456.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
444.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
442.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
430.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
428.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
421.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
415.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
413.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
413.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
407.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
405.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
401.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
398.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
393.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
387.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
385.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
381.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
371.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
371.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
370.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
370.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
369.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
362.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
361.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
359.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
348.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
346.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
343.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
336.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
334.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
334.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
325.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
325.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
324.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
320.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
318.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
315.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
315.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
307.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
307.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
306.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
305.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
302.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
302.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
301.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
299.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
299.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
299.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
295.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
295.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
294.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
294.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
293.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
290.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
288.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
288.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
285.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
285.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
284.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
284.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
282.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
282.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
278.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
277.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
277.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
276.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
275.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
275.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
272.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
272.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
269.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
268.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
267.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
264.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
262.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
261.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
256.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
255.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
252.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
251.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
250.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
248.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
248.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
247.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
246.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
242.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
239.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
238.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
237.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
235.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
235.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
232.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
232.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
231.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
229.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
229.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
227.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
226.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
226.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
224.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
223.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
223.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
222.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
222.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
222.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
220.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
217.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
216.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
214.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
214.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
213.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
211.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
210.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
210.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
206.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
204.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
204.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
204.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
202.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
201.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
200.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
200.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
200.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
199.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
199.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
199.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
199.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
198.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
198.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
196.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
195.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
194.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
194.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
193.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
191.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
191.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
190.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
190.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
190.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
190.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
190.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
187.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
187.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
186.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
186.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
186.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
185.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
185.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
183.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
183.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
183.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
183.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
181.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
181.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
180.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
179.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
178.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
178.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
178.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
177.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
177.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
176.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
176.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
176.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
175.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
174.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
174.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
173.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
172.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
172.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
172.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
172.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
170.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
170.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
169.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
168.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
168.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
167.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
167.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
166.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
166.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
166.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
164.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
163.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
163.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
163.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
163.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
162.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
162.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
162.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
161.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
160.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
160.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
160.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
160.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
160.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
159.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
159.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
159.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
158.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
158.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
157.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
157.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
157.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
157.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
157.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
157.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
156.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
156.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
155.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
154.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
154.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
153.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
151.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
151.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
149.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
148.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
147.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
147.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
146.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
146.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
145.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
145.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
144.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
143.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
142.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
142.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
142.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
142.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
141.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
141.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
141.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
141.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
140.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
140.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
140.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
139.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
138.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
137.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
136.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
136.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
135.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
135.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
133.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
133.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
133.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
132.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
131.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
131.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
131.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
131.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
130.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
130.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
130.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
130.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
130.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
129.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
128.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
128.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
127.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
127.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
126.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
126.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
126.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
125.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
125.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
124.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
122.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
121.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
120.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
120.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
120.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
118.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
118.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
118.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
117.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
117.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
116.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
115.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
114.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
114.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
113.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
113.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
113.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
113.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
112.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
112.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
111.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
109.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
109.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
109.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
108.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
108.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
108.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
107.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
107.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
106.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
106.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
106.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
106.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
105.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
105.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
104.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
104.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
101.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
101.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
100.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
100.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
98.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
98.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
95.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
93.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
90.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
87.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
87.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
86.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
86.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
86.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
85.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
85.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
85.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
85.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
84.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
83.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
82.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
81.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
81.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
80.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
80.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
79.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
77.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
75.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
75.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
69.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
69.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
67.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
66.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
63.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
60.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
60.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
52.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
45.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMGN2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
132.6
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
391.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
361.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
345.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
327.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
315.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
312.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
307.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
299.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
298.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
294.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
284.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
281.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
279.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
272.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
264.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
261.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
260.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
257.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
250.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
247.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
247.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
244.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
242.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
231.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
226.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
226.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
222.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
221.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
214.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
214.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
213.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
213.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
212.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
211.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
207.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
204.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
202.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
201.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
199.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
197.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
195.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
194.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
194.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
191.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
189.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
188.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
186.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
186.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
185.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
184.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
183.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
180.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
179.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
176.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
169.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
169.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
167.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
166.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
165.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
163.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
162.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
161.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
159.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
158.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
156.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
156.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
155.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
154.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
154.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
154.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
154.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
154.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
152.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
152.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
151.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
149.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
146.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
144.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
143.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
143.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
141.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
140.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
138.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
138.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
137.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
137.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
136.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
134.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
134.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
134.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
133.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
132.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
132.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
130.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
128.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
128.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
127.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
126.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
126.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
125.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
124.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
124.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
121.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
120.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
120.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
119.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
118.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
117.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
117.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
117.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
117.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
117.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
116.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
114.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
114.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
112.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
111.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
111.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
110.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
110.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
110.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
109.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
109.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
108.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
108.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
108.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
108.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
106.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
106.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
106.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
105.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
104.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
103.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
102.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
102.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
102.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
101.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
100.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
100.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
99.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
99.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
98.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
98.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
98.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
96.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
95.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
95.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
94.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
94.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
93.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
92.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
91.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
90.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
89.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
89.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
89.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
88.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
88.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
87.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
86.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
86.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
86.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
86.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
85.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
85.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
84.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
83.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
83.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
82.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
82.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
82.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
82.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
81.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
81.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
80.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
79.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
79.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
79.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
79.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
78.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
77.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
77.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
75.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
75.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
75.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
75.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
74.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
74.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
73.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
73.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
72.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
72.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
72.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
71.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
70.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
70.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
69.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
69.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
67.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
67.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
66.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
66.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
64.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
64.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
64.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
64.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
63.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
62.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
60.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
60.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
60.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
59.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
58.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
58.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
57.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
57.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
57.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
56.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
54.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
52.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
46.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
44.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
44.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
42.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
41.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
37.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
37.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.7
695
Tumor
1.5
865
Tumor
1.4
663
Tumor
1.4
493
Tumor
1.3
727
Tumor
1.2
737
Tumor
1.2
481
Tumor
1.2
473
Tumor
1.1
965
Tumor
1.1
357
Tumor
1.1
112
Tumor
1.0
425
Tumor
1.0
355
Tumor
1.0
483
Tumor
0.9
937
Tumor
0.9
533
Tumor
0.9
341
Tumor
0.8
943
Tumor
0.8
487
Tumor
0.8
283
Tumor
0.8
411
Tumor
0.8
545
Tumor
0.8
951
Tumor
0.7
467
Tumor
0.7
883
Tumor
0.7
465
Tumor
0.7
744
Normal
0.7
498
Normal
0.7
477
Tumor
0.7
953
Tumor
0.7
538
Normal
0.7
463
Tumor
0.7
1013
Tumor
0.7
977
Tumor
0.6
1014
Normal
0.6
431
Tumor
0.6
516
Normal
0.6
161
Tumor
0.6
492
Normal
0.6
661
Tumor
0.6
375
Tumor
0.6
515
Tumor
0.6
857
Tumor
0.6
524
Normal
0.6
471
Tumor
0.6
435
Tumor
0.5
741
Tumor
0.5
443
Tumor
0.5
878
Normal
0.5
923
Tumor
0.5
351
Tumor
0.5
966
Normal
0.5
267
Tumor
0.5
984
Normal
0.5
211
Tumor
0.5
478
Normal
0.5
963
Tumor
0.4
917
Tumor
0.4
313
Tumor
0.4
911
Tumor
0.4
525
Tumor
0.4
491
Tumor
0.4
546
Normal
0.4
554
Normal
0.4
527
Tumor
0.4
488
Normal
0.4
513
Tumor
0.4
261
Tumor
0.4
1021
Tumor
0.4
873
Tumor
0.4
685
Tumor
0.4
647
Tumor
0.4
535
Tumor
0.4
938
Normal
0.4
415
Tumor
0.4
954
Normal
0.4
818
Normal
0.4
536
Normal
0.4
958
Normal
0.3
698
Normal
0.3
778
Normal
0.3
343
Tumor
0.3
445
Tumor
0.3
964
Normal
0.3
484
Normal
0.3
975
Tumor
0.3
412
Normal
0.3
814
Normal
0.3
823
Tumor
0.3
924
Normal
0.3
472
Normal
0.3
785
Tumor
0.3
494
Normal
0.3
957
Tumor
0.3
311
Tumor
0.3
858
Normal
0.3
553
Tumor
0.3
277
Tumor
0.3
572
Normal
0.3
461
Tumor
0.3
615
Tumor
0.3
447
Tumor
0.3
364
Normal
0.3
714
Normal
0.3
867
Tumor
0.3
716
Normal
0.3
518
Normal
0.2
882
Normal
0.2
135
Tumor
0.2
863
Tumor
0.2
1015
Tumor
0.2
866
Normal
0.2
1044
Normal
0.2
365
Tumor
0.2
912
Normal
0.2
455
Tumor
0.2
523
Tumor
0.2
1026
Normal
0.2
1045
Tumor
0.2
482
Normal
0.2
385
Tumor
0.2
1041
Tumor
0.2
743
Tumor
0.2
852
Normal
0.2
567
Tumor
0.2
387
Tumor
0.2
1031
Tumor
0.2
721
Tumor
0.2
981
Tumor
0.2
922
Normal
0.2
696
Normal
0.2
127
Tumor
0.2
413
Tumor
0.2
944
Normal
0.2
537
Tumor
0.1
756
Normal
0.1
881
Tumor
0.1
123
Tumor
0.1
746
Normal
0.1
474
Normal
0.1
884
Normal
0.1
968
Normal
0.1
777
Tumor
0.1
427
Tumor
0.1
813
Tumor
0.1
131
Tumor
0.1
824
Normal
0.1
224
Normal
0.1
861
Tumor
0.1
967
Tumor
0.1
952
Normal
0.1
571
Tumor
0.1
448
Normal
0.1
534
Normal
0.1
955
Tumor
0.1
433
Tumor
0.1
816
Normal
0.1
284
Normal
0.1
983
Tumor
0.1
976
Normal
0.1
1042
Normal
0.1
864
Normal
0.1
918
Normal
0.1
686
Normal
0.1
563
Tumor
0.1
916
Normal
0.0
672
Normal
0.0
862
Normal
0.0
926
Normal
0.0
1032
Normal
0.0
874
Normal
0.0
1022
Normal
0.0
915
Tumor
0.0
141
Tumor
0.0
925
Tumor
0.0
978
Normal
0.0
517
Tumor
0.0
913
Tumor
0.0
635
Tumor
0.0
353
Tumor
0.0
528
Normal
0.0
1028
Normal
0.0
1046
Normal
0.0
212
Normal
0.0
171
Tumor
0.0
228
Normal
0.0
328
Normal
0.0
662
Normal
0.0
352
Normal
0.0
185
Tumor
0.0
423
Tumor
0.0
298
Normal
0.0
742
Normal
0.0
514
Normal
0.0
356
Normal
-0.1
297
Tumor
-0.1
956
Normal
-0.1
384
Normal
-0.1
137
Tumor
-0.1
722
Normal
-0.1
877
Tumor
-0.1
723
Tumor
-0.1
738
Normal
-0.1
786
Normal
-0.1
231
Tumor
-0.1
142
Normal
-0.1
223
Tumor
-0.1
724
Normal
-0.1
462
Normal
-0.1
434
Normal
-0.1
728
Normal
-0.1
285
Tumor
-0.1
817
Tumor
-0.1
416
Normal
-0.1
456
Normal
-0.2
396
Normal
-0.2
192
Normal
-0.2
628
Normal
-0.2
332
Normal
-0.2
125
Tumor
-0.2
1016
Normal
-0.2
982
Normal
-0.2
421
Tumor
-0.2
344
Normal
-0.2
428
Normal
-0.2
755
Tumor
-0.2
921
Tumor
-0.2
391
Tumor
-0.2
526
Normal
-0.2
362
Normal
-0.2
272
Normal
-0.2
196
Normal
-0.2
1027
Tumor
-0.2
868
Normal
-0.2
568
Normal
-0.2
664
Normal
-0.2
286
Normal
-0.2
636
Normal
-0.2
342
Normal
-0.2
715
Tumor
-0.3
558
Normal
-0.3
376
Normal
-0.3
257
Tumor
-0.3
213
Tumor
-0.3
666
Normal
-0.3
354
Normal
-0.3
574
Normal
-0.3
564
Normal
-0.3
1025
Tumor
-0.3
436
Normal
-0.3
671
Tumor
-0.3
366
Normal
-0.3
914
Normal
-0.3
262
Normal
-0.3
557
Tumor
-0.3
386
Normal
-0.3
361
Tumor
-0.3
218
Normal
-0.3
146
Normal
-0.3
128
Normal
-0.4
648
Normal
-0.4
217
Tumor
-0.4
432
Normal
-0.4
424
Normal
-0.4
188
Normal
-0.4
745
Tumor
-0.4
617
Tumor
-0.4
426
Normal
-0.4
268
Normal
-0.4
232
Normal
-0.4
468
Normal
-0.4
446
Normal
-0.4
114
Normal
-0.4
573
Tumor
-0.4
1043
Tumor
-0.4
616
Normal
-0.4
271
Tumor
-0.5
618
Normal
-0.5
697
Tumor
-0.5
358
Normal
-0.5
383
Tumor
-0.5
815
Tumor
-0.5
312
Normal
-0.5
414
Normal
-0.5
331
Tumor
-0.5
222
Normal
-0.5
395
Tumor
-0.5
642
Normal
-0.5
444
Normal
-0.5
665
Tumor
-0.5
111
Normal
-0.5
195
Tumor
-0.5
466
Normal
-0.5
851
Tumor
-0.6
394
Normal
-0.6
124
Normal
-0.6
422
Normal
-0.6
713
Tumor
-0.6
258
Normal
-0.6
388
Normal
-0.6
221
Tumor
-0.6
367
Tumor
-0.6
162
Normal
-0.6
136
Normal
-0.6
186
Normal
-0.6
363
Tumor
-0.6
113
Tumor
-0.6
148
Normal
-0.6
451
Tumor
-0.6
327
Tumor
-0.6
452
Normal
-0.6
126
Normal
-0.6
214
Normal
-0.7
392
Normal
-0.7
464
Normal
-0.7
314
Normal
-0.7
138
Normal
-0.7
278
Normal
-0.7
627
Tumor
-0.7
393
Tumor
-0.8
132
Normal
-0.8
227
Tumor
-0.8
641
Tumor
-0.8
191
Tumor
-0.9
145
Tumor
-0.9
172
Normal
-0.9
368
Normal
-0.9
187
Tumor
-0.9
147
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.