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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCBP2 is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
491.7
Number of samples
349
Samples
Sample
Description
TPM
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
1126.8
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
1119.2
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
1031.0
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
1001.9
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
928.0
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
927.0
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
885.7
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
880.7
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
871.2
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
862.4
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
857.2
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
852.2
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
849.6
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
832.7
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
822.5
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
818.6
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
818.4
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
818.3
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
814.3
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
810.5
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
806.7
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
789.8
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
789.5
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
775.8
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
775.4
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
774.6
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
773.9
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
766.4
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
763.7
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
762.3
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
748.6
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
739.1
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
733.3
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
732.3
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
731.4
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
729.7
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
729.4
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
729.3
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
727.4
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
726.5
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
725.1
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
719.7
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
717.7
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
716.3
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
714.7
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
714.1
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
699.9
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
698.9
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
694.0
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
689.9
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
685.1
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
682.8
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
682.3
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
676.1
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
674.4
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
672.8
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
666.5
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
666.3
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
662.9
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
661.6
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
659.2
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
658.3
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
657.3
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
655.0
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
644.6
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
641.2
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
634.7
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
629.5
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
629.0
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
628.3
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
626.4
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
626.2
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
624.9
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
620.6
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
615.8
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
615.3
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
613.5
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
613.0
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
611.6
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
607.4
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
604.4
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
604.1
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
600.1
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
599.2
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
596.7
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
596.3
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
591.8
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
590.0
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
589.9
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
586.2
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
584.4
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
584.0
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
581.7
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
581.1
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
580.0
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
579.3
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
578.7
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
578.4
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
576.8
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
575.1
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
572.2
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
570.6
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
570.6
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
570.2
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
568.9
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
566.7
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
566.0
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
565.8
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
565.6
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
565.0
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
564.5
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
563.3
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
563.1
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
558.5
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
556.1
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
555.2
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
554.2
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
553.1
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
551.7
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
551.1
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
547.3
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
547.0
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
544.4
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
544.0
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
542.2
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
542.2
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
539.8
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
538.6
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
538.3
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
538.0
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
534.3
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
532.4
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
532.4
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
532.3
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
529.3
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
527.1
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
526.7
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
526.6
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
526.5
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
522.8
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
522.5
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
520.2
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
518.6
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
518.4
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
517.0
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
516.6
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
515.5
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
515.3
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
515.1
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
514.5
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
514.3
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
511.2
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
510.8
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
508.5
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
503.8
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
501.8
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
499.1
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
498.0
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
488.3
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
485.1
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
481.3
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
479.9
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
478.6
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
476.4
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
474.3
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
472.4
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
472.0
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
469.2
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
467.4
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
465.5
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
464.3
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
464.3
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
463.4
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
462.7
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
461.7
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
460.0
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
457.3
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
456.5
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
454.9
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
453.7
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
452.9
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
452.4
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
452.3
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
451.8
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
450.1
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
449.6
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
448.4
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
448.1
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
448.0
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
446.9
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
446.4
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
445.6
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
444.2
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
440.8
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
440.4
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
439.9
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
439.0
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
438.8
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
437.4
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
437.2
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
437.0
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
434.6
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
434.6
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
430.9
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
428.8
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
428.6
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
427.7
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
426.0
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
425.4
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
425.0
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
424.3
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
424.2
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
422.6
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
422.2
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
422.1
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
422.0
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
421.5
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
419.9
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
419.7
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
418.9
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
417.8
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
416.4
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
415.7
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
415.6
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
414.3
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
412.6
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
412.3
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
412.0
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
409.1
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
407.5
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
404.2
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
402.1
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
401.9
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
400.7
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
398.7
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
398.6
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
398.2
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
398.2
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
397.9
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
397.5
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
397.5
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
395.4
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
393.9
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
393.5
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
392.5
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
392.0
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
391.2
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
390.7
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
389.2
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
388.1
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
387.8
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
386.7
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
386.6
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
386.3
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
386.3
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
385.8
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
381.6
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
379.8
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
379.0
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
378.0
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
377.6
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
376.9
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
374.6
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
371.2
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
369.7
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
369.5
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
369.4
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
366.8
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
365.6
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
364.7
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
364.2
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
362.2
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
361.6
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
361.3
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
360.9
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
358.0
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
354.1
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
345.3
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
342.8
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
342.8
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
342.4
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
342.1
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
341.8
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
335.7
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
335.5
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
333.1
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
332.3
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
331.1
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
330.8
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
328.6
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
320.8
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
319.8
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
319.6
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
316.4
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
314.9
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
314.6
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
311.0
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
303.8
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
302.8
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
302.2
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
302.2
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
300.9
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
297.4
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
295.5
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
294.8
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
293.5
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
291.2
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
284.1
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
283.6
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
278.7
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
275.2
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
273.7
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
273.0
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
269.4
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
267.7
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
265.7
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
265.4
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
264.9
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
264.5
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
264.2
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
263.5
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
260.9
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
255.3
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
252.9
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
252.3
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
250.2
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
248.2
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
247.3
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
245.1
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
241.7
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
240.0
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
239.8
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
238.4
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
232.5
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
229.0
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
223.9
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
219.4
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
214.1
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
207.3
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
207.0
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
197.9
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
179.0
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
177.7
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
176.1
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
157.7
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
149.5
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
148.9
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
147.5
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCBP2 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
383.1
Number of samples
81
Samples
Sample
Description
TPM
DO46378
0 years, female, NA, stage:III, alive, 843 days
1057.1
DO46330
0 years, female, NA, stage:III, dead, 684 days
873.5
DO46561
0 years, female, NA, stage:III, dead, 195 days
580.0
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
571.2
DO46358
0 years, female, NA, stage:III, dead, 423 days
568.3
DO46597
0 years, female, NA, stage:III, dead, 393 days
567.7
DO46533
0 years, female, NA, stage:III, alive, 3667 days
563.1
DO46468
0 years, female, NA, stage:III, alive, 2776 days
562.0
DO46364
0 years, female, NA, stage:III, dead, 806 days
558.9
DO46463
0 years, female, NA, stage:III, dead, 2451 days
554.2
DO46362
0 years, female, NA, stage:III, dead, 1639 days
543.4
DO46328
0 years, female, NA, stage:III, dead, 972 days
541.7
DO46384
0 years, female, NA, stage:III, dead, 614 days
533.3
DO46336
0 years, female, NA, stage:IV, dead, 664 days
520.7
DO46412
0 years, female, NA, stage:III, dead, 597 days
499.7
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
489.8
DO46346
0 years, female, NA, stage:III, dead, 1187 days
479.5
DO46568
0 years, female, NA, stage:III, dead, 320 days
478.4
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
468.5
DO46390
0 years, female, NA, stage:III, dead, 374 days
468.3
DO46348
0 years, female, NA, stage:IV, dead, 287 days
467.5
DO46588
0 years, female, NA, stage:III, dead, 438 days
465.6
DO46586
0 years, female, NA, stage:III, dead, 1019 days
461.1
DO46404
0 years, female, NA, stage:III, dead, 690 days
457.3
DO46352
0 years, female, NA, stage:III, dead, 677 days
440.6
DO46402
0 years, female, NA, stage:III, dead, 511 days
439.1
DO46368
0 years, female, NA, stage:III, dead, 2879 days
434.9
DO46338
0 years, female, NA, stage:III, dead, 596 days
428.6
DO46551
0 years, female, NA, stage:III, dead, 1055 days
421.7
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
421.2
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
417.2
DO46560
0 years, female, NA, stage:IV, dead, 286 days
412.8
DO46396
0 years, female, NA, stage:III, dead, 583 days
411.9
DO46566
0 years, female, NA, stage:III, dead, 673 days
409.7
DO46432
0 years, female, NA, stage:III, alive, 2218 days
406.5
DO46332
0 years, female, NA, stage:III, dead, 689 days
401.3
DO46538
0 years, female, NA, stage:III, dead, 1527 days
398.3
DO46326
0 years, female, NA, stage:III, dead, 701 days
387.5
DO46448
0 years, female, NA, stage:III, dead, 654 days
385.4
DO46591
0 years, female, NA, stage:III, dead, 195 days
382.7
DO46508
0 years, female, NA, stage:III, dead, 2101 days
380.6
DO46334
0 years, female, NA, stage:III, dead, 496 days
380.3
DO46398
0 years, female, NA, stage:III, alive, 437 days
379.1
DO46344
0 years, female, NA, stage:III, dead, 642 days
373.8
DO46386
0 years, female, NA, stage:III, dead, 1162 days
370.8
DO46453
0 years, female, NA, stage:III, dead, 3294 days
369.4
DO46340
0 years, female, NA, stage:III, dead, 616 days
360.7
DO46443
0 years, female, NA, stage:III, dead, 2464 days
357.3
DO46382
0 years, female, NA, stage:IV, dead, 311 days
344.5
DO46436
0 years, female, NA, stage:III, alive, 3193 days
340.6
DO46370
0 years, female, NA, stage:III, dead, 1727 days
337.9
DO46329
0 years, female, NA, stage:III, dead, 1699 days
332.9
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
327.7
DO46325
0 years, female, NA, stage:III, dead, 477 days
314.4
DO46581
0 years, female, NA, stage:III, dead, 408 days
292.7
DO46356
0 years, female, NA, stage:III, dead, 911 days
289.8
DO46392
0 years, female, NA, stage:III, dead, 628 days
283.8
DO46376
0 years, female, NA, stage:III, dead, 1430 days
283.4
DO46380
0 years, female, NA, stage:III, dead, 1423 days
279.5
DO46372
0 years, female, NA, stage:III, dead, 1326 days
265.6
DO46546
0 years, female, NA, stage:III, dead, 1889 days
265.4
DO46571
0 years, female, NA, stage:III, dead, 243 days
265.4
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
259.4
DO46408
0 years, female, NA, stage:III, dead, 489 days
257.3
DO46388
0 years, female, NA, stage:III, dead, 413 days
255.8
DO46518
0 years, female, NA, stage:III, alive, 2960 days
250.8
DO46606
0 years, female, NA, stage:III, alive, 804 days
250.2
DO46528
0 years, female, NA, stage:III, alive, 6139 days
246.5
DO46331
0 years, female, NA, stage:III, dead, 612 days
242.5
DO46374
0 years, female, NA, stage:III, dead, 1409 days
240.2
DO46327
0 years, female, NA, stage:III, dead, 184 days
237.7
DO46493
0 years, female, NA, stage:IV, alive, 839 days
226.0
DO46354
0 years, female, NA, stage:III, dead, 843 days
224.3
DO46400
0 years, female, NA, stage:III, dead, 719 days
223.4
DO46350
0 years, female, NA, stage:III, dead, 886 days
208.8
DO46602
0 years, female, NA, stage:III, dead, 205 days
183.8
DO46342
0 years, female, NA, stage:III, dead, 1398 days
163.7
DO46576
0 years, female, NA, stage:III, alive, 133 days
137.6
DO46333
0 years, female, NA, stage:III, dead, 359 days
137.6
DO46366
0 years, female, NA, stage:III, dead, 2054 days
87.8
DO46611
0 years, female, NA, stage:III, dead, 734 days
76.7
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OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
0.9
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
0.8
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
0.8
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
0.8
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
0.8
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
0.7
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
0.7
e9d416e7-f661-400a-896e-388545_D2
Tumor
0.7
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
0.7
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
0.7
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
0.7
161317f3-1a39-438e-af45-cd2502_D2
Tumor
0.7
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
0.7
2f901c90-617e-46da-9fac-d68369_D2
Tumor
0.7
1a10c200-3895-4648-b951-94f99f_D2
Tumor
0.7
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
0.6
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
0.6
10c2d629-0287-4511-ac25-f29031_D2
Tumor
0.6
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
0.6
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
0.6
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
0.6
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
0.6
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
0.6
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
0.6
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
0.6
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
0.6
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
0.6
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
0.6
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
0.6
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
0.6
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
0.6
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
0.6
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
0.5
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
0.5
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
0.5
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
0.5
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
0.5
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
0.5
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
0.5
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
0.5
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
0.5
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
0.5
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
0.5
a3a26070-fb84-406a-8280-d555e6_D2
Normal
0.5
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
0.5
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
0.5
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
0.5
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
0.5
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
0.5
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
0.5
15524912-685a-47ce-a824-567848_D2
Tumor
0.5
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
0.4
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
0.4
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
0.4
1772e913-f62e-446a-8cf3-720348_D2
Tumor
0.4
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
0.4
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
0.4
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
0.4
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
0.4
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
0.4
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
0.4
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
0.3
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
0.3
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
0.3
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
0.3
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
0.3
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
0.3
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
0.3
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
0.3
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
0.3
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
0.3
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
0.3
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
0.3
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
0.3
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
0.3
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
0.3
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
0.3
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
0.3
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
0.3
340a3769-3031-41ae-bb08-a2f696_D2
Normal
0.3
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
0.3
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
0.3
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
0.3
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
0.3
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
0.3
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
0.2
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
0.2
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
0.2
a65d8e76-640f-4341-a561-afbb57_D2
Normal
0.2
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
0.2
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
0.2
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
0.2
285fed94-1495-448e-879b-b55de9_D2
Tumor
0.2
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
0.2
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
0.2
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
0.2
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
0.2
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
0.1
21efd60f-6a31-4b98-9477-16a905_D2
Normal
0.1
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
0.1
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
0.1
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
0.1
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
0.0
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
0.0
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-0.1
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-0.2
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
-0.2
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
-0.2
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OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.