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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCBP2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
306.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
931.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
733.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
701.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
689.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
679.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
677.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
659.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
657.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
654.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
632.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
615.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
612.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
608.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
603.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
581.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
577.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
571.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
552.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
549.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
536.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
534.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
527.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
526.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
519.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
518.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
517.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
514.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
513.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
506.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
505.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
503.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
501.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
491.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
487.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
486.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
486.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
483.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
482.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
481.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
481.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
474.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
470.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
470.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
469.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
467.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
466.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
466.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
466.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
457.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
454.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
454.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
453.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
453.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
452.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
449.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
447.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
447.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
446.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
446.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
442.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
441.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
438.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
438.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
436.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
432.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
432.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
429.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
427.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
427.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
427.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
425.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
424.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
424.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
423.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
420.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
418.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
417.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
413.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
413.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
412.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
412.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
411.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
410.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
409.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
406.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
405.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
404.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
397.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
396.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
395.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
394.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
387.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
385.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
382.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
382.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
380.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
377.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
374.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
374.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
373.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
370.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
369.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
369.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
367.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
366.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
365.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
365.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
365.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
365.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
365.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
365.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
363.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
362.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
362.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
359.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
359.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
359.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
358.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
356.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
355.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
354.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
350.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
350.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
350.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
349.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
349.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
349.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
348.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
347.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
342.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
339.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
337.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
335.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
335.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
334.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
334.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
333.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
329.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
329.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
328.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
328.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
324.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
322.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
321.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
318.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
316.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
316.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
316.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
314.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
311.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
310.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
310.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
309.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
307.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
306.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
306.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
305.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
305.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
304.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
304.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
303.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
301.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
300.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
300.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
299.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
297.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
296.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
296.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
296.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
294.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
294.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
293.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
293.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
292.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
292.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
291.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
291.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
289.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
287.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
287.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
287.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
286.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
285.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
284.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
283.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
283.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
282.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
282.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
282.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
280.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
279.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
277.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
276.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
275.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
275.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
274.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
273.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
271.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
271.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
269.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
268.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
266.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
266.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
265.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
265.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
264.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
263.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
260.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
260.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
258.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
257.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
256.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
254.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
254.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
254.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
254.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
253.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
252.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
251.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
249.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
246.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
245.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
245.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
245.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
243.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
242.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
241.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
241.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
240.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
238.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
236.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
235.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
234.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
233.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
232.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
232.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
230.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
230.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
230.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
229.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
229.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
228.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
228.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
227.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
227.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
227.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
224.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
223.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
223.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
222.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
221.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
220.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
220.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
220.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
218.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
218.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
217.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
215.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
215.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
214.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
214.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
213.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
212.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
212.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
211.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
210.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
209.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
209.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
208.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
207.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
207.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
205.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
204.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
204.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
204.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
204.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
203.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
203.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
203.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
201.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
199.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
197.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
196.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
196.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
195.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
195.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
194.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
193.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
192.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
191.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
189.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
189.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
188.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
187.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
184.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
183.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
182.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
179.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
179.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
179.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
177.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
177.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
175.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
174.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
172.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
172.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
172.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
169.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
169.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
168.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
167.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
167.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
167.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
162.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
161.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
161.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
159.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
159.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
158.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
155.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
154.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
153.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
152.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
151.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
151.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
149.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
148.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
145.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
145.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
144.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
143.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
143.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
143.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
141.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
141.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
140.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
137.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
135.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
134.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
133.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
128.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
122.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
122.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
121.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
118.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
117.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
115.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
113.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
108.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
106.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
105.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
102.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
99.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
98.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
98.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
96.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
84.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
77.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
72.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
67.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
65.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCBP2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
138.7
Number of samples
231
Samples
Sample
Description
TPM
DO50785
0 years, male, NA, stage:4, dead, 90 days
442.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
353.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
286.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
285.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
272.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
269.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
263.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
262.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
259.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
243.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
236.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
234.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
229.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
222.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
219.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
217.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
216.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
214.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
211.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
210.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
204.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
202.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
201.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
199.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
196.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
196.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
195.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
194.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
193.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
193.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
193.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
186.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
184.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
184.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
184.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
183.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
181.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
179.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
177.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
177.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
177.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
177.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
176.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
173.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
173.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
173.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
170.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
169.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
168.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
167.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
167.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
166.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
166.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
165.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
164.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
164.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
164.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
163.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
163.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
163.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
162.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
157.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
157.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
157.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
156.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
156.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
155.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
155.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
152.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
152.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
151.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
150.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
149.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
149.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
148.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
148.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
147.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
147.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
147.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
146.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
146.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
146.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
145.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
145.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
145.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
144.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
143.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
143.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
142.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
142.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
142.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
141.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
141.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
141.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
141.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
140.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
139.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
138.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
137.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
137.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
136.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
136.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
135.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
135.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
135.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
135.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
134.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
133.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
133.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
133.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
132.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
132.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
132.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
131.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
131.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
130.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
130.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
129.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
128.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
127.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
127.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
127.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
126.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
126.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
125.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
125.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
125.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
124.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
123.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
123.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
122.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
121.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
121.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
121.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
121.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
120.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
120.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
119.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
119.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
119.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
118.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
117.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
117.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
117.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
117.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
117.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
116.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
116.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
115.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
115.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
115.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
115.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
115.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
114.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
113.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
113.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
112.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
111.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
111.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
110.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
109.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
109.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
109.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
108.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
107.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
107.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
107.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
106.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
106.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
106.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
105.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
104.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
104.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
103.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
103.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
103.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
101.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
101.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
100.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
100.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
100.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
100.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
100.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
99.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
98.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
96.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
96.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
95.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
94.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
94.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
94.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
93.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
93.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
92.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
91.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
91.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
90.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
89.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
88.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
88.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
88.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
88.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
87.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
87.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
87.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
86.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
84.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
84.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
84.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
81.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
80.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
80.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
80.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
80.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
79.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
78.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
78.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
78.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
77.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
77.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
75.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
73.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
72.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
71.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
71.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
71.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
71.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
71.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
69.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
63.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
46.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
367
Tumor
0.9
463
Tumor
0.5
727
Tumor
0.5
743
Tumor
0.5
661
Tumor
0.5
351
Tumor
0.4
285
Tumor
0.4
815
Tumor
0.4
443
Tumor
0.4
877
Tumor
0.3
617
Tumor
0.3
425
Tumor
0.3
363
Tumor
0.3
1027
Tumor
0.3
131
Tumor
0.3
331
Tumor
0.3
455
Tumor
0.3
385
Tumor
0.2
865
Tumor
0.2
635
Tumor
0.2
671
Tumor
0.2
137
Tumor
0.2
517
Tumor
0.2
277
Tumor
0.2
983
Tumor
0.2
413
Tumor
0.2
283
Tumor
0.2
435
Tumor
0.2
357
Tumor
0.2
313
Tumor
0.2
257
Tumor
0.2
647
Tumor
0.2
724
Normal
0.2
467
Tumor
0.2
411
Tumor
0.2
161
Tumor
0.2
523
Tumor
0.2
567
Tumor
0.2
497
Tumor
0.1
278
Normal
0.1
298
Normal
0.1
921
Tumor
0.1
125
Tumor
0.1
135
Tumor
0.1
737
Tumor
0.1
965
Tumor
0.1
663
Tumor
0.1
113
Tumor
0.1
147
Tumor
0.1
777
Tumor
0.1
297
Tumor
0.1
515
Tumor
0.1
423
Tumor
0.1
527
Tumor
0.1
341
Tumor
0.1
571
Tumor
0.1
393
Tumor
0.1
365
Tumor
0.1
1021
Tumor
0.1
391
Tumor
0.1
573
Tumor
0.1
557
Tumor
0.1
813
Tumor
0.1
433
Tumor
0.1
387
Tumor
0.1
465
Tumor
0.1
375
Tumor
0.1
814
Normal
0.1
141
Tumor
0.1
271
Tumor
0.1
451
Tumor
0.1
851
Tumor
0.1
421
Tumor
0.1
361
Tumor
0.1
713
Tumor
0.1
314
Normal
0.1
427
Tumor
0.1
343
Tumor
0.1
445
Tumor
0.1
746
Normal
0.1
943
Tumor
0.1
112
Tumor
0.1
353
Tumor
0.0
436
Normal
0.0
447
Tumor
0.0
967
Tumor
0.0
695
Tumor
0.0
914
Normal
0.0
312
Normal
0.0
466
Normal
0.0
642
Normal
0.0
311
Tumor
0.0
456
Normal
0.0
738
Normal
0.0
446
Normal
0.0
866
Normal
0.0
395
Tumor
0.0
286
Normal
0.0
422
Normal
0.0
537
Tumor
0.0
138
Normal
0.0
912
Normal
0.0
744
Normal
0.0
615
Tumor
0.0
431
Tumor
0.0
132
Normal
0.0
424
Normal
0.0
464
Normal
0.0
368
Normal
0.0
332
Normal
0.0
741
Tumor
0.0
136
Normal
0.0
545
Tumor
0.0
1016
Normal
0.0
272
Normal
0.0
628
Normal
0.0
1043
Tumor
0.0
873
Tumor
0.0
563
Tumor
0.0
862
Normal
0.0
461
Tumor
0.0
824
Normal
0.0
428
Normal
0.0
864
Normal
0.0
145
Tumor
0.0
981
Tumor
0.0
881
Tumor
0.0
786
Normal
0.0
258
Normal
0.0
221
Tumor
0.0
664
Normal
0.0
618
Normal
0.0
267
Tumor
0.0
665
Tumor
0.0
867
Tumor
0.0
452
Normal
0.0
362
Normal
0.0
662
Normal
0.0
723
Tumor
0.0
518
Normal
0.0
868
Normal
0.0
228
Normal
0.0
262
Normal
0.0
742
Normal
0.0
111
Normal
0.0
392
Normal
0.0
123
Tumor
0.0
648
Normal
0.0
222
Normal
0.0
957
Tumor
0.0
468
Normal
0.0
261
Tumor
0.0
641
Tumor
0.0
546
Normal
0.0
666
Normal
0.0
426
Normal
0.0
213
Tumor
0.0
366
Normal
0.0
818
Normal
0.0
227
Tumor
0.0
414
Normal
0.0
852
Normal
0.0
925
Tumor
0.0
627
Tumor
0.0
858
Normal
0.0
352
Normal
0.0
513
Tumor
0.0
444
Normal
0.0
232
Normal
0.0
976
Normal
0.0
498
Normal
0.0
146
Normal
0.0
913
Tumor
0.0
616
Normal
0.0
268
Normal
0.0
882
Normal
0.0
755
Tumor
0.0
977
Tumor
0.0
525
Tumor
0.0
187
Tumor
0.0
968
Normal
0.0
171
Tumor
0.0
383
Tumor
0.0
874
Normal
0.0
1026
Normal
0.0
728
Normal
-0.1
514
Normal
-0.1
196
Normal
-0.1
923
Tumor
-0.1
816
Normal
-0.1
778
Normal
-0.1
142
Normal
-0.1
878
Normal
-0.1
224
Normal
-0.1
327
Tumor
-0.1
124
Normal
-0.1
528
Normal
-0.1
284
Normal
-0.1
953
Tumor
-0.1
756
Normal
-0.1
883
Tumor
-0.1
978
Normal
-0.1
432
Normal
-0.1
434
Normal
-0.1
1022
Normal
-0.1
462
Normal
-0.1
416
Normal
-0.1
128
Normal
-0.1
487
Tumor
-0.1
148
Normal
-0.1
1042
Normal
-0.1
937
Tumor
-0.1
186
Normal
-0.1
982
Normal
-0.1
534
Normal
-0.1
964
Normal
-0.1
217
Tumor
-0.1
1015
Tumor
-0.1
214
Normal
-0.1
188
Normal
-0.1
358
Normal
-0.1
554
Normal
-0.1
1028
Normal
-0.1
911
Tumor
-0.1
493
Tumor
-0.1
162
Normal
-0.1
533
Tumor
-0.1
195
Tumor
-0.1
386
Normal
-0.1
714
Normal
-0.1
863
Tumor
-0.1
538
Normal
-0.1
388
Normal
-0.1
745
Tumor
-0.1
126
Normal
-0.1
1032
Normal
-0.1
223
Tumor
-0.1
396
Normal
-0.1
722
Normal
-0.1
185
Tumor
-0.1
356
Normal
-0.1
526
Normal
-0.1
966
Normal
-0.1
918
Normal
-0.1
127
Tumor
-0.1
636
Normal
-0.1
488
Normal
-0.1
955
Tumor
-0.1
484
Normal
-0.1
376
Normal
-0.1
975
Tumor
-0.1
558
Normal
-0.1
884
Normal
-0.1
384
Normal
-0.1
342
Normal
-0.1
696
Normal
-0.1
394
Normal
-0.1
672
Normal
-0.1
344
Normal
-0.1
857
Tumor
-0.1
212
Normal
-0.1
114
Normal
-0.1
494
Normal
-0.1
218
Normal
-0.1
516
Normal
-0.1
172
Normal
-0.1
956
Normal
-0.1
686
Normal
-0.1
574
Normal
-0.1
1014
Normal
-0.1
716
Normal
-0.1
481
Tumor
-0.2
954
Normal
-0.2
564
Normal
-0.2
1031
Tumor
-0.2
917
Tumor
-0.2
984
Normal
-0.2
355
Tumor
-0.2
412
Normal
-0.2
354
Normal
-0.2
926
Normal
-0.2
211
Tumor
-0.2
568
Normal
-0.2
535
Tumor
-0.2
524
Normal
-0.2
861
Tumor
-0.2
1045
Tumor
-0.2
415
Tumor
-0.2
944
Normal
-0.2
474
Normal
-0.2
553
Tumor
-0.2
192
Normal
-0.2
915
Tumor
-0.2
938
Normal
-0.2
1041
Tumor
-0.2
952
Normal
-0.2
572
Normal
-0.2
472
Normal
-0.2
364
Normal
-0.2
715
Tumor
-0.2
1044
Normal
-0.2
721
Tumor
-0.2
1025
Tumor
-0.2
328
Normal
-0.2
191
Tumor
-0.2
924
Normal
-0.2
922
Normal
-0.2
492
Normal
-0.2
1013
Tumor
-0.2
482
Normal
-0.2
471
Tumor
-0.2
698
Normal
-0.2
817
Tumor
-0.2
491
Tumor
-0.2
785
Tumor
-0.2
477
Tumor
-0.2
448
Normal
-0.2
1046
Normal
-0.2
951
Tumor
-0.2
916
Normal
-0.3
823
Tumor
-0.3
958
Normal
-0.3
231
Tumor
-0.3
478
Normal
-0.3
483
Tumor
-0.3
685
Tumor
-0.4
536
Normal
-0.4
697
Tumor
-0.4
963
Tumor
-0.4
473
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.