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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
369.3
Sample id
Sample description
nTPM
Amygdala nTPM: 369.3
2814
Male, age 76, right hemisphere
1527.9
2695
Female, age 67, right hemisphere
149.9
2514
Male, age 75, right hemisphere
67.8
1987
Female, age 91, left hemisphere
59.2
2517
Female, age 94, left hemisphere
41.4
Basal amygdala nTPM: 147.4
1955
Male, age 76, both hemispheres
677.4
2243
Female, age 91, right hemisphere
73.0
2110
Male, age 80, left hemisphere
40.6
2609
Male, age 75, right hemisphere
33.5
2827
Female, age 67, right hemisphere
33.3
2685
Female, age 94, left hemisphere
26.8
Central amygdala nTPM: 348.5
1905
Male, age 76, both hemispheres
1467.4
2701
Female, age 91, right hemisphere
108.0
2515
Male, age 75, right hemisphere
78.5
2826
Female, age 94, left hemisphere
54.2
2239
Male, age 80, left hemisphere
34.6
Corticomedial amygdala nTPM: 146.8
2240
Male, age 76, both hemispheres
577.2
2829
Male, age 80, left hemisphere
86.8
2242
Female, age 91, right hemisphere
83.7
2429
Female, age 94, left hemisphere
70.6
2428
Male, age 75, right hemisphere
33.0
2535
Female, age 67, right hemisphere
29.5
Lateral amygdala nTPM: 202.8
1883
Male, age 76, both hemispheres
1039.8
2516
Male, age 75, right hemisphere
50.3
2255
Female, age 91, right hemisphere
49.5
2830
Female, age 67, right hemisphere
32.1
2256
Male, age 80, left hemisphere
26.5
2534
Female, age 94, left hemisphere
18.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
53.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 53.3
Samples: 152
Max nTPM: 268.8
Min nTPM: 8.1
Std nTPM: 43.9
Median nTPM: 40.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
268.8
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
244.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
210.0
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
188.3
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
183.6
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
170.6
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
157.7
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
144.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
137.8
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
135.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
128.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
120.6
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
109.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
105.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
104.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
99.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
96.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
95.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
94.0
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
93.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
90.6
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
89.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
89.3
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
87.8
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
87.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
87.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
87.0
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
81.9
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
78.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
74.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
69.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
67.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
65.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
64.9
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
64.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
62.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
62.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
60.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
60.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
60.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
59.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
58.4
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
57.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
57.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
56.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
55.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
54.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
54.4
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
52.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
51.8
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
51.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
50.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
50.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
50.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
50.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
50.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
49.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
49.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
48.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
48.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
48.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
48.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
48.0
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
47.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
47.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
46.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
45.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
43.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
43.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
42.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
42.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
42.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
41.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
41.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
40.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
40.3
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
39.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
39.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
39.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
39.2
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
39.1
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
38.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
38.3
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
36.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
36.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
35.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
34.8
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
34.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
34.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
34.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
33.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
33.1
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
32.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
32.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
32.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
31.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
31.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
31.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
30.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
30.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
30.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
30.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
29.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
29.0
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
29.0
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
29.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
28.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
28.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
28.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
27.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
27.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
26.8
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
25.9
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
25.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
25.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
25.2
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
25.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
25.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
25.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
24.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
24.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
23.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
23.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
23.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
23.3
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
23.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
21.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
21.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
20.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
20.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
19.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
19.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
18.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
17.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
17.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
17.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
17.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
17.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
16.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
16.3
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
15.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
15.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
15.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
15.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
15.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
14.9
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
14.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
13.1
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
11.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
9.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
8.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
8.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
