HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:15.6 nTPM
HPA Brain:58.1 nTPM
GTEx:15.6 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:51.1 nTPM
Mouse:31.3 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells010203040nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016812
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 58.1
Sample id Sample description nTPM
Hippocampus
nTPM: 42.3
1898 Male, age 80, left hemisphere 56.8
2148 Female, age 91, left hemisphere 45.9
2621 Female, age 67, right hemisphere 43.2
1855 Male, age 76, left hemisphere 39.4
2529 Female, age 94, left hemisphere 35.5
1911 Female, age 85, right hemisphere 32.8
Dentate gyrus
nTPM: 45.4
1927 Female, age 91, both hemispheres 56.6
2528 Male, age 74, both hemispheres 44.8
2530 Female, age 94, left hemisphere 44.1
2531 Female, age 67, both hemispheres 43.9
2246 Female, age 85, both hemispheres 41.7
2010 Male, age 76, both hemispheres 41.3
Entorhinal gyrus
nTPM: 46.5
2764 Male, age 80, right hemisphere 57.4
2613 Female, age 94, left hemisphere 53.1
1938 Female, age 85, left hemisphere 52.2
1787 Male, age 76, left hemisphere 48.4
2686 Male, age 75, right hemisphere 34.5
2117 Female, age 91, right hemisphere 33.5
Hippocampus, CA1
nTPM: 45.5
2749 Male, age 80, left hemisphere 65.3
1873 Female, age 85, both hemispheres 51.0
2527 Male, age 74, both hemispheres 39.7
2045 Male, age 76, both hemispheres 38.0
2082 Female, age 91, right hemisphere 33.6
Hippocampus, CA2
nTPM: 44.5
1963 Male, age 80, left hemisphere 60.1
1892 Male, age 76, both hemispheres 54.4
2437 Female, age 94, left hemisphere 42.5
1940 Female, age 85, left hemisphere 39.8
2113 Female, age 91, right hemisphere 36.1
2249 Male, age 74, both hemispheres 34.0
Hippocampus, CA3
nTPM: 48.8
2861 Female, age 67, both hemispheres 64.9
2137 Male, age 80, left hemisphere 56.7
2620 Female, age 94, left hemisphere 50.2
1867 Male, age 76, both hemispheres 44.0
2436 Male, age 74, both hemispheres 40.8
1891 Female, age 85, both hemispheres 36.1
Parahippocampal cortex
nTPM: 43.6
1850 Male, age 80, both hemispheres 59.0
2532 Female, age 72, left hemisphere 50.0
1990 Female, age 91, right hemisphere 48.1
1933 Female, age 85, both hemispheres 46.8
2245 Female, age 91, both hemispheres 43.8
2250 Female, age 67, right hemisphere 40.9
2693 Female, age 94, both hemispheres 39.2
2018 Male, age 76, both hemispheres 37.8
2622 Female, age 67, right hemisphere 36.6
2692 Male, age 74, both hemispheres 33.5
Perirhinal gyrus
nTPM: 58.1
1847 Female, age 91, left hemisphere 68.4
1794 Male, age 80, right hemisphere 67.4
1841 Female, age 85, right hemisphere 54.6
2521 Female, age 94, right hemisphere 51.7
2848 Male, age 76, right hemisphere 48.6
Subiculum
nTPM: 37.1
1977 Female, age 85, both hemispheres 49.2
2619 Male, age 74, both hemispheres 40.2
1901 Male, age 80, both hemispheres 40.1
2729 Female, age 91, right hemisphere 35.6
2042 Male, age 76, both hemispheres 30.6
2438 Female, age 94, left hemisphere 26.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 15.6
GTEx sample id Sample description nTPM
11.814.118.17.627.505101520253035
Brain - Hippocampus
Average nTPM: 15.6
Samples: 255

Max nTPM: 37.1
Min nTPM: 7.6
Std nTPM: 5.5
Median nTPM: 14.1
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 37.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 36.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 36.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 34.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 34.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 34.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 33.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 32.8
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 31.0
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 30.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 28.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.1
FF:10169-103B7 60 years, female 29.0
FF:10153-102I9 76 years, female 23.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 51.1
Pig sample Sample description nTPM
40.241.545.737.141.70510152025303540455055
 		Subiculum
nTPM: 44.4
Samples: 4

Max nTPM: 57.7
Min nTPM: 37.1
Sample A Female 57.7
Sample B Female 41.2
Sample C Male 41.7
Sample D Male 37.1
43.150.958.540.960.2051015202530354045505560
 		Dorsal hippocampus
nTPM: 50.7
Samples: 4

Max nTPM: 60.2
Min nTPM: 40.9
Sample A Female 60.2
Sample B Female 57.9
Sample C Male 40.9
Sample D Male 43.9
48.651.253.744.058.00510152025303540455055
 		Entorhinal cortex
nTPM: 51.1
Samples: 4

Max nTPM: 58.0
Min nTPM: 44.0
Sample A Female 58.0
Sample B Female 52.3
Sample C Male 50.1
Sample D Male 44.0
47.151.753.750.556.20510152025303540455055
 		Ventral hippocampus
nTPM: 49.1
Samples: 4

Max nTPM: 56.2
Min nTPM: 36.9
Sample A Female 50.5
Sample B Female 36.9
Sample C Male 56.2
Sample D Male 52.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 31.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.2
Samples: 4

Max nTPM: 32.9
Min nTPM: 29.4
Sample A Male 31.1
Sample B Male 29.4
Sample C Female 31.3
Sample D Female 32.9
Hippocampal formation
nTPM: 31.3
Samples: 4

Max nTPM: 33.0
Min nTPM: 29.7
Sample A Male 33.0
Sample B Male 29.7
Sample C Female 31.9
Sample D Female 30.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
70439117 Antisense, RP_050614_03_B11, Mouse strain C57BL/6J (56 days, male) 0.2

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