BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:18.9 nTPM
HPA Brain:55.2 nTPM
GTEx:18.9 nTPM
FANTOM5:51.7 Scaled Tags Per Million
Pig:51.7 nTPM
Mouse:33.6 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells010203040nCPM

CAUDATE - Antibody stainingi
Antibody HPA016812
Glial cells Not detected
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 55.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.1
1781 Male, age 74, unknown 50.2
2846 Female, age 79, unknown 43.6
2481 Female, age 94, left hemisphere 42.1
1857 Female, age 85, left hemisphere 38.5
2290 Female, age 72, unknown 38.2
1854 Male, age 80, left hemisphere 36.2
2288 Male, age 75, left hemisphere 33.8
2289 Male, age 61, right hemisphere 30.4
Globus pallidus, externus
nTPM: 30.3
2395 Male, age 75, both hemispheres 35.7
2772 Female, age 79, unknown 35.3
2646 Male, age 61, right hemisphere 28.0
1996 Male, age 80, right hemisphere 27.0
2567 Female, age 72, unknown 25.8
Globus pallidus, internus
nTPM: 31.6
2287 Male, age 75, right hemisphere 44.8
2483 Female, age 94, right hemisphere 37.2
1818 Male, age 74, unknown 31.2
2778 Female, age 91, both hemispheres 30.5
2566 Female, age 72, unknown 28.1
2037 Male, age 80, right hemisphere 25.3
2111 Female, age 85, right hemisphere 23.8
Nucleus accumbens
nTPM: 37.9
1856 Female, age 91, right hemisphere 47.7
1783 Male, age 74, unknown 45.7
1806 Female, age 85, left hemisphere 41.2
2824 Male, age 61, right hemisphere 36.9
2286 Male, age 75, left hemisphere 35.5
2698 Female, age 72, unknown 34.9
2732 Male, age 80, right hemisphere 32.3
2391 Female, age 94, left hemisphere 29.2
Nucleus basalis of Meynert
nTPM: 33.8
2821 Male, age 75, both hemispheres 38.2
2484 Female, age 94, left hemisphere 35.7
2393 Male, age 80, right hemisphere 32.4
2569 Male, age 61, both hemispheres 29.0
Nucleus of the diagonal band
nTPM: 55.2
2775 Male, age 80, right hemisphere 64.6
1812 Female, age 91, both hemispheres 59.9
2195 Female, age 85, both hemispheres 57.8
2029 Male, age 61, right hemisphere 51.0
1979 Male, age 74, unknown 42.8
Putamen
nTPM: 40.1
2466 Female, age 79, unknown 47.7
2647 Male, age 75, left hemisphere 41.5
1937 Female, age 91, right hemisphere 41.2
1838 Male, age 80, right hemisphere 40.9
2482 Female, age 94, left hemisphere 37.9
1829 Male, age 74, unknown 36.2
2489 Female, age 72, unknown 35.3
Septal nuclei
nTPM: 49.9
2031 Female, age 72, unknown 65.2
1960 Male, age 74, unknown 63.3
2629 Female, age 94, right hemisphere 51.7
2009 Female, age 91, both hemispheres 51.2
2059 Female, age 85, both hemispheres 45.7
2394 Male, age 61, left hemisphere 36.9
2199 Male, age 80, right hemisphere 35.3
Stria terminalis, bed nucleus
nTPM: 53.9
1974 Female, age 91, both hemispheres 61.0
2486 Female, age 94, both hemispheres 53.8
2201 Male, age 74, unknown 46.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 18.9
GTEx sample id Sample description nTPM
12.014.218.37.627.805101520253035
Brain - Caudate (basal ganglia)
Average nTPM: 15.7
Samples: 300

Max nTPM: 38.1
Min nTPM: 7.6
Std nTPM: 5.3
Median nTPM: 14.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 38.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 33.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 33.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 32.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 31.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 31.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 30.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 29.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 29.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 29.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 29.0
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13.117.724.27.839.205101520253035
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.9
Samples: 285

Max nTPM: 39.2
Min nTPM: 7.8
Std nTPM: 6.8
Median nTPM: 17.7
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 39.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 38.1
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 37.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 36.3
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 34.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 33.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 33.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 32.9
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 32.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 31.8
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 31.6
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11.413.917.67.426.3024681012141618202224262830
Brain - Putamen (basal ganglia)
Average nTPM: 14.7
Samples: 254

Max nTPM: 31.6
Min nTPM: 7.4
Std nTPM: 4.2
Median nTPM: 13.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 31.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 28.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 28.0
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 26.3
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 24.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 23.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 22.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 22.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 22.4
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 22.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 22.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 24.5
FF:10164-103B2 76 years, female 24.5
Nucleus accumbens
Scaled Tags Per Million: 51.7
FF:10037-101F1 23-56 years, mixed 51.7
Putamen
Scaled Tags Per Million: 35.2
FF:10176-103C5 60 years, female 35.2
Globus pallidus
Scaled Tags Per Million: 22.3
FF:10175-103C4 60 years, female 22.7
FF:10161-103A8 76 years, female 21.8

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 51.7
Pig sample Sample description nTPM
49.952.454.252.359.30510152025303540455055
 		Caudate
nTPM: 51.7
Samples: 4

Max nTPM: 59.3
Min nTPM: 42.6
Sample A Female 42.6
Sample B Female 52.5
Sample C Male 59.3
Sample D Male 52.3
41.248.357.136.067.305101520253035404550556065
 		Putamen
nTPM: 50.0
Samples: 4

Max nTPM: 67.3
Min nTPM: 36.0
Sample A Female 36.0
Sample B Female 42.9
Sample C Male 67.3
Sample D Male 53.7
45.748.149.340.650.905101520253035404550
 		Septum
nTPM: 46.9
Samples: 4

Max nTPM: 50.9
Min nTPM: 40.6
Sample A Female 48.8
Sample B Female 47.4
Sample C Male 50.9
Sample D Male 40.6
45.246.447.242.748.8051015202530354045
 		Ventral pallidum
nTPM: 46.1
Samples: 4

Max nTPM: 48.8
Min nTPM: 42.7
Sample A Female 46.7
Sample B Female 46.0
Sample C Male 48.8
Sample D Male 42.7

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 33.6
Mouse sample Sample description nTPM
26.127.028.124.330.4024681012141618202224262830
 		Caudate putamen
nTPM: 27.2
Samples: 4

Max nTPM: 30.4
Min nTPM: 24.3
Sample A Male 24.3
Sample B Male 30.4
Sample C Female 27.3
Sample D Female 26.7
31.833.935.630.236.405101520253035
 		Septum
nTPM: 33.6
Samples: 4

Max nTPM: 36.4
Min nTPM: 30.2
Sample A Male 35.4
Sample B Male 32.4
Sample C Female 30.2
Sample D Female 36.4
Ventral forebrain
nTPM: 29.7
Samples: 4

Max nTPM: 31.8
Min nTPM: 28.1
Sample A Male 28.1
Sample B Male 28.8
Sample C Female 31.8
Sample D Female 30.0

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70439117 Antisense, RP_050614_03_B11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70439117 Antisense, RP_050614_03_B11, Mouse strain C57BL/6J (56 days, male) 0.0

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