COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: Not detected
Glandular cells: Not detected
Peripheral nerve/ganglion: Medium
RNA expressioni
Consensus:21.8 nTPM
HPA:16.4 nTPM
GTEx:21.8 nTPM
FANTOM5:20.4 Scaled Tags Per Million
COLON - SINGLE CELL RNA EXPRESSION
Neuroendocrine cellsTuft cellsColonocytesGoblet cellsT-cellsNK-cellsEnteric transient amplifying cellsEnteric stem cells010203040nCPM

COLON - Antibody stainingi
Antibody HPA016812
Endothelial cells Not detected
Glandular cells Not detected
Peripheral nerve/ganglion Medium


COLON - HPA RNA-seqi
Average nTPMi 16.4
overview
Male, age 54
Colon sample 67
nTPM: 13.6
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview
Female, age 57
Colon sample 68
nTPM: 15.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview
Male, age 80
Colon sample 69
nTPM: 17.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview
Male, age 68
Colon sample 70
nTPM: 11.5
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 68
Colon sample 76
nTPM: 13.7
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview
Female, age 61
Colon sample 299
nTPM: 22.2
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview
Male, age 80
Colon sample 300
nTPM: 17.4
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview
Female, age 78
Colon sample 368
nTPM: 16.3
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview
Male, age 84
Colon sample 381
nTPM: 17.1
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview
Male, age 80
Colon sample 384
nTPM: 16.7
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview
Female, age 78
Colon sample 389
nTPM: 17.8
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 69
Colon sample 391
nTPM: 18.1
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview
Female, age 72
Colon sample 403
nTPM: 16.3
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Max subtype nTPMi 21.8
GTEx sample id Sample description nTPM
17.321.325.19.336.8051015202530354045
Colon - Sigmoid
Average nTPM: 21.8
Samples: 419

Max nTPM: 48.3
Min nTPM: 9.3
Std nTPM: 6.0
Median nTPM: 21.3
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 48.3
GTEX-1A3MX-2326-SM-718B4 60-69 years, male 40.6
GTEX-1HCUA-1926-SM-B2LWE 50-59 years, female 40.4
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 39.2
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 38.3
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 37.6
GTEX-1I1CD-2826-SM-A9SL4 60-69 years, female 37.5
GTEX-1N2EF-1726-SM-EXUSI 60-69 years, male 37.0
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 36.8
GTEX-15DYW-2426-SM-7KUG8 60-69 years, female 36.8
GTEX-1B8KE-1526-SM-7DUG2 50-59 years, male 36.0
Show allShow less
12.915.219.57.828.905101520253035
Colon - Transverse
Average nTPM: 16.9
Samples: 479

Max nTPM: 36.6
Min nTPM: 7.8
Std nTPM: 5.5
Median nTPM: 15.2
GTEX-1C2JI-1626-SM-7EPHC 50-59 years, male 36.6
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 35.4
GTEX-14C5O-2526-SM-5P9I5 60-69 years, male 35.3
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 35.2
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 35.0
GTEX-1GL5R-2426-SM-7MXV1 50-59 years, male 34.8
GTEX-145ME-0826-SM-G9EQJ 40-49 years, female 34.7
GTEX-1HSMP-2326-SM-D3L8R 70-79 years, male 34.6
GTEX-1N2EF-1926-SM-DTX8M 60-69 years, male 34.2
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 33.7
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 33.0
Show allShow less

COLON - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 20.4
FF:10014-101C5 62,83,84 years, mixed 20.4

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo