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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS21 is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2869.7
Number of samples
349
Samples
Sample
Description
TPM
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
11892.4
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
10077.6
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
8925.4
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
8760.5
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
8430.2
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
8132.3
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
7947.2
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
7873.6
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
7773.2
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
7649.7
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
7358.9
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
7164.0
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
6948.4
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
6508.0
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
6487.4
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
6384.6
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
6106.6
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
6096.6
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
5982.5
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
5620.3
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
5572.3
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
5523.3
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
5522.5
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
5480.4
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
5438.8
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
5410.5
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
5388.3
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
5352.7
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
5350.9
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
5222.7
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
5097.5
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
5066.8
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
4893.7
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
4886.3
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
4877.9
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
4849.2
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
4834.8
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
4763.3
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
4707.1
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
4667.1
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
4648.0
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
4647.8
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
4642.4
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
4586.3
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
4564.0
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
4520.3
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
4517.1
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
4484.2
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
4469.1
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
4426.9
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
4360.4
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
4336.2
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
4305.3
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
4301.6
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
4268.0
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
4244.4
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
4241.0
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
4225.3
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
4158.3
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
4075.9
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
4011.8
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
3986.4
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
3958.4
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
3921.2
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
3858.8
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
3830.4
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
3810.3
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
3804.3
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
3792.2
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
3790.3
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
3740.1
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
3739.9
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
3728.3
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
3718.1
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
3699.9
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
3691.1
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
3672.5
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
3672.0
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
3649.6
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
3616.3
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
3606.0
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
3605.1
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
3563.5
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
3558.1
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
3533.8
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
3494.5
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
3486.4
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
3478.9
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
3408.1
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
3401.0
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
3380.1
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
3360.4
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
3357.2
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
3351.8
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
3338.0
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
3332.0
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
3331.9
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
3326.8
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
3324.2
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
3322.9
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
3305.6
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
3303.1
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
3282.6
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
3271.1
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
3220.7
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
3169.6
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
3165.4
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
3163.7
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
3152.0
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
3146.4
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
3136.5
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
3134.5
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
3129.9
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
3121.6
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
3108.6
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
3097.8
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
3084.8
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
3062.5
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
3061.9
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
3049.4
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
3045.1
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
3043.8
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
3042.6
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
3032.1
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
3020.6
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
3017.9
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
3000.3
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
2997.6
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
2993.4
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
2969.6
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
2962.5
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
2946.6
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
2912.0
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
2902.1
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
2895.2
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
2889.6
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
2873.0
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
2853.3
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
2853.1
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
2852.4
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
2834.9
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
2833.5
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
2821.2
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
2810.6
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
2788.6
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
2754.2
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
2717.3
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
2696.6
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
2677.8
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
2676.8
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
2675.6
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
2666.8
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
2647.9
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
2641.2
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
2631.5
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
2624.3
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
2618.4
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
2607.4
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
2601.9
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
2601.3
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
2599.6
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
2597.1
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
2589.6
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
2576.7
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
2546.5
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
2529.6
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
2529.4
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
2514.6
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
2499.4
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
2484.0
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
2475.1
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
2473.9
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
2466.0
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
2460.2
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
2455.2
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
2437.4
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
2429.2
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
2407.9
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
2404.7
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
2393.8
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
2377.9
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
2362.0
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
2344.8
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
2332.3
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
2330.9
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
2325.5
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
2294.2
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
2290.3
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
2285.3
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
2279.9
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
2277.6
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
2271.8
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
2253.1
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
2242.4
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
2237.7
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
2221.4
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
2214.2
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
2209.7
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
2206.6
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
2205.5
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
2199.6
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
2195.7
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
2193.1
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
2190.1
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
2186.6
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
2173.0
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
2170.6
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
2166.0
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
2162.8
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
2161.9
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
2153.7
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
2146.6
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
2145.1
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
2142.3
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
2137.3
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
2117.8
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
2087.1
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
2083.8
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
2074.6
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
2072.5
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
2069.9
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
2057.1
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
2044.3
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
2028.4
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
2014.2
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
1998.0
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
1997.8
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
1985.0
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
1964.0
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
1962.0
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
1960.3
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
1957.8
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
1956.7
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
1955.4
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
1947.4
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
1945.2
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
1934.0
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
1926.3
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
1919.4
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
1918.2
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
1912.4
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
1906.8
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
1891.7
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
1876.5
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
1870.2
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
1868.0
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
1858.8
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
1857.6
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
1856.1
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
1847.0
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
1831.7
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
1825.1
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
1819.5
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
1816.1
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
1812.9
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
1812.5
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
1809.4
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
1806.5
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
1783.3
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
1776.5
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
1772.2
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
1767.5
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
1756.4
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
1740.0
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
1738.7
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
1719.0
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
1702.3
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
1697.2
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
1689.8
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
1684.4
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
1678.9
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
1656.8
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
1643.9
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
1638.1
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
1636.0
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
1634.0
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
1633.3
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
1628.2
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
1626.6
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
1615.4
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
1608.4
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
1605.8
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
1588.1
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
1581.3
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
1576.8
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
1573.4
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
1572.2
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
1555.3
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
1549.3
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
1548.0
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
1539.6
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
1533.4
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
1520.6
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
1519.0
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
1508.0
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
1494.2
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
1490.0
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
1479.5
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
1477.9
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
1472.8
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
1469.9
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
1455.2
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
1448.4
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
1407.9
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
1399.0
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
1390.3
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
1379.2
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
1375.8
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
1361.9
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
1355.7
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
1342.6
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
1338.6
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
1337.8
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
1336.0
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
1332.9
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
1330.3
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
1319.6
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
1305.6
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
1300.1
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
1299.1
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
1280.8
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
1278.3
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
1277.8
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
1266.3
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
1261.0
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
1249.7
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
1248.2
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
1211.3
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
1202.3
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
1201.4
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
1193.4
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
1192.6
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
1170.5
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
1169.6
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
1151.9
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
1118.4
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
1106.9
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
1103.3
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
1059.9
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
1047.1
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
1041.5
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
1015.9
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
973.0
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
948.2
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
888.8
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
807.8
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
776.3
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
688.7
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS21 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3193.9
Number of samples
81
Samples
Sample
Description
TPM
DO46356
0 years, female, NA, stage:III, dead, 911 days
11330.3
DO46333
0 years, female, NA, stage:III, dead, 359 days
10488.2
DO46366
0 years, female, NA, stage:III, dead, 2054 days
9518.0
DO46390
0 years, female, NA, stage:III, dead, 374 days
9441.5
DO46576
0 years, female, NA, stage:III, alive, 133 days
9433.1
DO46453
0 years, female, NA, stage:III, dead, 3294 days
6418.0
DO46611
0 years, female, NA, stage:III, dead, 734 days
5422.4
DO46561
0 years, female, NA, stage:III, dead, 195 days
5300.0
DO46331
0 years, female, NA, stage:III, dead, 612 days
4940.3
DO46586
0 years, female, NA, stage:III, dead, 1019 days
4797.2
DO46370
0 years, female, NA, stage:III, dead, 1727 days
4793.9
DO46463
0 years, female, NA, stage:III, dead, 2451 days
4528.1
DO46581
0 years, female, NA, stage:III, dead, 408 days
4229.8
DO46384
0 years, female, NA, stage:III, dead, 614 days
4127.3
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
3991.4
DO46402
0 years, female, NA, stage:III, dead, 511 days
3976.1
DO46468
0 years, female, NA, stage:III, alive, 2776 days
3965.8
DO46330
0 years, female, NA, stage:III, dead, 684 days
3963.8
DO46538
0 years, female, NA, stage:III, dead, 1527 days
3945.6
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
3943.1
DO46325
0 years, female, NA, stage:III, dead, 477 days
3902.8
DO46372
0 years, female, NA, stage:III, dead, 1326 days
3897.7
DO46364
0 years, female, NA, stage:III, dead, 806 days
3832.9
DO46591
0 years, female, NA, stage:III, dead, 195 days
3594.1
DO46392
0 years, female, NA, stage:III, dead, 628 days
3462.6
DO46568
0 years, female, NA, stage:III, dead, 320 days
3322.7
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
3303.5
DO46400
0 years, female, NA, stage:III, dead, 719 days
3301.2
DO46342
0 years, female, NA, stage:III, dead, 1398 days
3263.3
DO46386
0 years, female, NA, stage:III, dead, 1162 days
3056.9
DO46328
0 years, female, NA, stage:III, dead, 972 days
3052.7
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
2957.2
DO46493
0 years, female, NA, stage:IV, alive, 839 days
2938.4
DO46412
0 years, female, NA, stage:III, dead, 597 days
2938.2
DO46338
0 years, female, NA, stage:III, dead, 596 days
2927.0
DO46376
0 years, female, NA, stage:III, dead, 1430 days
2921.7
DO46352
0 years, female, NA, stage:III, dead, 677 days
2862.5
DO46350
0 years, female, NA, stage:III, dead, 886 days
2764.4
DO46432
0 years, female, NA, stage:III, alive, 2218 days
2738.8
DO46358
0 years, female, NA, stage:III, dead, 423 days
2731.8
DO46566
0 years, female, NA, stage:III, dead, 673 days
2711.9
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
2621.4
DO46380
0 years, female, NA, stage:III, dead, 1423 days
2535.5
DO46382
0 years, female, NA, stage:IV, dead, 311 days
2530.9
DO46518
0 years, female, NA, stage:III, alive, 2960 days
2449.7
DO46334
0 years, female, NA, stage:III, dead, 496 days
2400.6
DO46551
0 years, female, NA, stage:III, dead, 1055 days
2373.6
DO46597
0 years, female, NA, stage:III, dead, 393 days
2269.8
DO46388
0 years, female, NA, stage:III, dead, 413 days
2265.5
DO46398
0 years, female, NA, stage:III, alive, 437 days
2259.8
DO46443
0 years, female, NA, stage:III, dead, 2464 days
2242.3
DO46528
0 years, female, NA, stage:III, alive, 6139 days
2136.0
DO46374
0 years, female, NA, stage:III, dead, 1409 days
2107.4
DO46533
0 years, female, NA, stage:III, alive, 3667 days
2095.3
DO46326
0 years, female, NA, stage:III, dead, 701 days
2095.3
DO46368
0 years, female, NA, stage:III, dead, 2879 days
2093.4
DO46344
0 years, female, NA, stage:III, dead, 642 days
2078.2
DO46448
0 years, female, NA, stage:III, dead, 654 days
2072.9
DO46354
0 years, female, NA, stage:III, dead, 843 days
2059.6
DO46588
0 years, female, NA, stage:III, dead, 438 days
2030.9
DO46362
0 years, female, NA, stage:III, dead, 1639 days
1982.4
DO46546
0 years, female, NA, stage:III, dead, 1889 days
1899.9
DO46378
0 years, female, NA, stage:III, alive, 843 days
1897.3
DO46408
0 years, female, NA, stage:III, dead, 489 days
1780.0
DO46404
0 years, female, NA, stage:III, dead, 690 days
1726.7
DO46508
0 years, female, NA, stage:III, dead, 2101 days
1651.7
DO46560
0 years, female, NA, stage:IV, dead, 286 days
1649.6
DO46348
0 years, female, NA, stage:IV, dead, 287 days
1604.5
DO46602
0 years, female, NA, stage:III, dead, 205 days
1590.2
DO46396
0 years, female, NA, stage:III, dead, 583 days
1571.4
DO46346
0 years, female, NA, stage:III, dead, 1187 days
1568.4
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
1463.8
DO46329
0 years, female, NA, stage:III, dead, 1699 days
1444.8
DO46571
0 years, female, NA, stage:III, dead, 243 days
1435.4
DO46336
0 years, female, NA, stage:IV, dead, 664 days
1373.7
DO46436
0 years, female, NA, stage:III, alive, 3193 days
1290.1
DO46332
0 years, female, NA, stage:III, dead, 689 days
1151.6
DO46340
0 years, female, NA, stage:III, dead, 616 days
1043.7
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
970.1
DO46606
0 years, female, NA, stage:III, alive, 804 days
945.8
DO46327
0 years, female, NA, stage:III, dead, 184 days
917.0
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
1.2
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
1.2
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
1.0
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
1.0
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
0.9
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
0.9
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
0.9
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
0.8
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
0.8
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
0.8
15524912-685a-47ce-a824-567848_D2
Tumor
0.8
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
0.8
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
0.8
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
0.8
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
0.8
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
0.8
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
0.7
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
0.7
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
0.7
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
0.7
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
0.7
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
0.7
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
0.7
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
0.6
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
0.6
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
0.6
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
0.6
285fed94-1495-448e-879b-b55de9_D2
Tumor
0.6
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
0.6
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
0.6
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
0.6
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
0.6
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
0.5
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
0.5
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
0.5
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
0.5
161317f3-1a39-438e-af45-cd2502_D2
Tumor
0.5
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
0.5
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
0.5
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
0.5
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
0.5
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
0.5
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
0.5
340a3769-3031-41ae-bb08-a2f696_D2
Normal
0.5
1772e913-f62e-446a-8cf3-720348_D2
Tumor
0.5
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
0.5
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
0.5
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
0.5
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
0.4
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
0.4
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
0.4
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
0.4
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
0.4
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
0.4
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
0.4
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
0.4
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
0.4
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
0.4
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
0.3
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
0.3
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
0.3
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
0.3
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
0.3
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
0.2
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
0.2
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
0.2
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
0.2
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
0.2
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
0.2
e9d416e7-f661-400a-896e-388545_D2
Tumor
0.2
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
0.2
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
0.1
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
0.1
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
0.1
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
0.1
10c2d629-0287-4511-ac25-f29031_D2
Tumor
0.1
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
0.1
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
0.1
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
0.0
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
0.0
1a10c200-3895-4648-b951-94f99f_D2
Tumor
0.0
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
0.0
2f901c90-617e-46da-9fac-d68369_D2
Tumor
-0.1
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
-0.1
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
-0.1
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
-0.1
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
-0.1
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
-0.2
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
-0.2
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
-0.3
a65d8e76-640f-4341-a561-afbb57_D2
Normal
-0.3
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
-0.3
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-0.3
21efd60f-6a31-4b98-9477-16a905_D2
Normal
-0.3
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
-0.4
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
-0.4
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
-0.4
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-0.4
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
-0.5
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
-0.5
a3a26070-fb84-406a-8280-d555e6_D2
Normal
-0.5
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-0.5
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-0.6
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
-0.6
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-0.6
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-0.7
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
-0.9
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
-1.4
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.