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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
95.1
nTPM
HPA Brain:
312.5
nTPM
GTEx:
95.1
nTPM
FANTOM5:
28.0
Scaled Tags Per Million
Pig:
75.5
nTPM
Mouse:
220.6
nTPM
Allen mouse:
13.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
312.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 291.3
2586
Male, age 75, left hemisphere
355.2
2828
Female, age 72, unknown
309.4
2411
Female, age 72, unknown
306.8
1830
Male, age 51, unknown
298.8
1833
Male, age 53, unknown
296.3
1827
Male, age 72, unknown
295.1
2666
Male, age 74, left hemisphere
291.6
1870
Female, age 42, unknown
274.3
2019
Male, age 18, unknown
252.6
2219
Male, age 76, both hemispheres
232.9
Dorsal raphe nucleus nTPM: 208.0
2750
Male, age 76, both hemispheres
292.3
2016
Female, age 72, unknown
201.4
1828
Male, age 53, unknown
186.8
2298
Female, age 72, unknown
184.3
2047
Male, age 72, unknown
175.2
Inferior colliculus nTPM: 220.2
2849
Male, age 72, unknown
254.3
1848
Female, age 42, unknown
224.0
1890
Male, age 53, unknown
201.3
2097
Female, age 72, unknown
201.3
Median raphe nucleus nTPM: 200.0
2220
Male, age 76, midline
200.0
Periaquaductal grey, anterior nTPM: 312.5
1947
Male, age 18, unknown
333.1
2502
Female, age 75, unknown
326.8
1795
Male, age 51, unknown
277.7
Periaquaductal grey, dorsal nTPM: 188.0
2464
Female, age 72, unknown
240.5
1840
Male, age 53, unknown
187.0
1831
Male, age 72, unknown
185.2
2850
Male, age 76, both hemispheres
139.4
Periaquaductal grey, lateral nTPM: 193.3
2053
Male, age 18, unknown
228.6
2272
Male, age 74, both hemispheres
196.2
2140
Male, age 76, both hemispheres
155.2
Pretectal area nTPM: 243.4
2407
Male, age 75, both hemispheres
316.3
1815
Male, age 53, unknown
288.9
2316
Male, age 76, right hemisphere
280.2
2007
Male, age 72, unknown
268.8
2825
Male, age 18, unknown
261.0
1816
Male, age 51, unknown
249.6
1817
Female, age 42, unknown
247.9
1944
Female, age 72, unknown
245.0
2224
Female, age 72, unknown
187.6
2667
Female, age 75, unknown
173.7
2273
Male, age 74, both hemispheres
158.1
Red nucleus nTPM: 310.2
2584
Male, age 75, left hemisphere
363.9
2823
Male, age 76, right hemisphere
355.6
2725
Female, age 75, unknown
325.3
2588
Male, age 74, left hemisphere
323.3
1904
Male, age 53, unknown
319.8
1865
Male, age 51, unknown
318.1
2769
Male, age 72, unknown
302.3
2227
Male, age 72, unknown
298.3
2785
Male, age 18, unknown
294.1
2503
Female, age 72, unknown
293.9
1954
Female, age 42, unknown
265.9
1821
Female, age 72, unknown
261.5
Substantia nigra nTPM: 262.0
2590
Female, age 75, unknown
335.5
2583
Male, age 75, right hemisphere
319.7
1851
Male, age 51, unknown
271.4
2409
Female, age 72, unknown
262.0
1941
Male, age 53, unknown
254.7
2665
Male, age 74, both hemispheres
252.4
1916
Female, age 42, unknown
248.1
1889
Female, age 72, unknown
242.8
2241
Male, age 72, unknown
217.9
2699
Male, age 18, unknown
215.2
Superior colliculus nTPM: 281.6
1895
Male, age 76, right hemisphere
319.7
1995
Male, age 72, unknown
307.7
1913
Female, age 42, unknown
294.0
1796
Male, age 53, unknown
293.2
2261
Male, age 18, unknown
290.4
2664
Male, age 75, both hemispheres
282.2
1839
Male, age 51, unknown
271.1
2668
Female, age 75, unknown
269.1
2587
Male, age 74, left hemisphere
248.9
2087
Female, age 72, unknown
239.3
Ventral tegmental area nTPM: 238.4
2410
Female, age 72, unknown
292.4
2218
Male, age 76, both hemispheres
244.8
1942
Male, age 51, unknown
236.1
1915
Female, age 42, unknown
233.3
2223
Female, age 72, unknown
212.3
2021
Male, age 53, unknown
211.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
95.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 95.1
Samples: 139
Max nTPM: 301.2
Min nTPM: 26.1
Std nTPM: 42.7
Median nTPM: 84.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
301.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
271.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
222.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
220.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
182.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
179.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
163.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
161.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
154.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
148.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
146.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
145.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
144.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
144.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
141.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
139.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
138.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
135.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
133.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
132.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
131.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
130.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
129.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
128.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
128.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
128.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
128.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
127.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
127.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
127.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
126.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
122.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
122.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
121.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
121.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
118.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
116.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
112.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
109.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
108.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
107.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
107.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
107.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
106.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
106.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
104.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
104.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
103.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
103.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
102.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
100.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
100.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
98.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
98.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
97.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
97.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
95.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
94.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
93.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
91.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
90.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
89.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
87.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
87.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
87.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
86.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
86.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
86.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
85.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
84.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
84.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
84.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
83.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
83.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
83.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
82.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
81.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
80.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
80.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
79.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
79.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
78.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
77.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
77.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
76.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
76.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
76.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
76.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
75.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
74.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
74.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
71.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
71.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
71.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
70.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
70.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
70.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
70.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
70.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
70.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
69.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
69.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
68.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
67.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
67.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
67.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
66.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
66.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
66.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
65.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
64.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
63.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
62.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
61.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
61.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
61.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
61.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
60.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
59.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
58.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
57.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
56.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
55.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
55.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
55.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
51.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
50.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
49.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
48.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
48.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
45.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
43.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
42.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
39.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
39.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
37.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
32.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
28.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
26.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
220.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 220.6
Samples: 4
Max nTPM: 231.4
Min nTPM: 208.8
Sample A
Male
208.8
Sample B
Male
219.0
Sample C
Female
231.4
Sample D
Female
223.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.