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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
127.6
nTPM
HPA Brain:
326.0
nTPM
GTEx:
127.6
nTPM
FANTOM5:
50.1
Scaled Tags Per Million
Pig:
96.2
nTPM
Mouse:
252.2
nTPM
Allen mouse:
17.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA036575
Antibody HPA036576
Glial cells
High
High
Neuronal cells
High
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
326.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 218.0
2621
Female, age 67, right hemisphere
259.9
2529
Female, age 94, left hemisphere
244.1
1911
Female, age 85, right hemisphere
224.5
2148
Female, age 91, left hemisphere
198.4
1898
Male, age 80, left hemisphere
194.6
1855
Male, age 76, left hemisphere
186.7
Dentate gyrus nTPM: 215.9
2530
Female, age 94, left hemisphere
264.3
2531
Female, age 67, both hemispheres
223.9
2246
Female, age 85, both hemispheres
210.3
2010
Male, age 76, both hemispheres
205.6
2528
Male, age 74, both hemispheres
203.3
1927
Female, age 91, both hemispheres
187.9
Entorhinal gyrus nTPM: 326.0
2613
Female, age 94, left hemisphere
421.5
2764
Male, age 80, right hemisphere
362.1
2117
Female, age 91, right hemisphere
329.2
2686
Male, age 75, right hemisphere
285.6
1938
Female, age 85, left hemisphere
283.3
1787
Male, age 76, left hemisphere
274.2
Hippocampus, CA1 nTPM: 201.2
2082
Female, age 91, right hemisphere
235.5
2527
Male, age 74, both hemispheres
231.8
2749
Male, age 80, left hemisphere
216.2
1873
Female, age 85, both hemispheres
196.9
2045
Male, age 76, both hemispheres
125.4
Hippocampus, CA2 nTPM: 234.3
2437
Female, age 94, left hemisphere
255.4
2113
Female, age 91, right hemisphere
241.2
1963
Male, age 80, left hemisphere
238.3
2249
Male, age 74, both hemispheres
226.1
1940
Female, age 85, left hemisphere
222.6
1892
Male, age 76, both hemispheres
222.3
Hippocampus, CA3 nTPM: 209.4
1891
Female, age 85, both hemispheres
248.7
2620
Female, age 94, left hemisphere
220.2
1867
Male, age 76, both hemispheres
218.3
2861
Female, age 67, both hemispheres
211.8
2137
Male, age 80, left hemisphere
190.2
2436
Male, age 74, both hemispheres
166.9
Parahippocampal cortex nTPM: 279.8
2532
Female, age 72, left hemisphere
344.6
2692
Male, age 74, both hemispheres
331.9
2622
Female, age 67, right hemisphere
313.8
2245
Female, age 91, both hemispheres
296.9
1990
Female, age 91, right hemisphere
288.1
2693
Female, age 94, both hemispheres
269.7
1850
Male, age 80, both hemispheres
269.5
1933
Female, age 85, both hemispheres
260.9
2018
Male, age 76, both hemispheres
216.4
2250
Female, age 67, right hemisphere
205.7
Perirhinal gyrus nTPM: 258.0
2521
Female, age 94, right hemisphere
270.1
1847
Female, age 91, left hemisphere
259.8
1794
Male, age 80, right hemisphere
258.0
2848
Male, age 76, right hemisphere
254.8
1841
Female, age 85, right hemisphere
247.3
Subiculum nTPM: 271.5
2042
Male, age 76, both hemispheres
303.4
1977
Female, age 85, both hemispheres
302.3
1901
Male, age 80, both hemispheres
286.6
2619
Male, age 74, both hemispheres
280.3
2438
Female, age 94, left hemisphere
276.7
2729
Female, age 91, right hemisphere
179.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
127.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 127.6
Samples: 197
Max nTPM: 318.9
Min nTPM: 10.0
Std nTPM: 44.5
Median nTPM: 120.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
318.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
267.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
264.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
248.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
238.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
236.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
225.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
223.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
221.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
213.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
205.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
199.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
199.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
198.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
195.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
195.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
194.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
191.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
190.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
189.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
188.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
184.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
180.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
180.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
179.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
179.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
178.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
176.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
176.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
172.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
171.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
169.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
166.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
165.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
164.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
163.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
161.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
159.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
158.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
157.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
157.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
155.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
154.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
154.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
154.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
153.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
151.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
150.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
148.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
146.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
146.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
146.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
145.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
145.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
145.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
144.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
144.2
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
143.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
142.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
141.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
141.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
140.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
139.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
139.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
139.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
138.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
138.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
138.2
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
138.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
137.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
135.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
134.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
134.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
134.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
132.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
132.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
132.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
131.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
130.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
129.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
128.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
126.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
126.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
125.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
125.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
125.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
125.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
125.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
124.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
123.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
122.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
122.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
122.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
121.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
121.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
121.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
120.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
120.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
120.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
120.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
120.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
119.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
118.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
118.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
117.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
117.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
116.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
116.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
115.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
115.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
114.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
114.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
114.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
113.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
113.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
112.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
112.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
111.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
111.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
110.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
110.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
110.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
109.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
109.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
108.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
108.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
107.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
107.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
106.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
106.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
106.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
105.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
105.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
104.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
104.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
103.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
102.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
101.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
101.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
100.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
100.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
98.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
98.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
97.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
97.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
97.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
97.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
97.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
97.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
96.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
96.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
96.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
96.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
95.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
93.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
93.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
92.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
92.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
91.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
90.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
89.7
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
88.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
88.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
88.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
88.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
87.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
87.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
87.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
87.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
87.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
87.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
86.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
86.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
85.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
85.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
84.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
84.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
84.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
82.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
80.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
77.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
76.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
76.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
75.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
69.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
69.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
65.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
64.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
63.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
62.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
61.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
60.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
60.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
55.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
54.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
51.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
10.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
252.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 243.6
Samples: 4
Max nTPM: 251.0
Min nTPM: 234.3
Sample A
Male
251.0
Sample B
Male
250.5
Sample C
Female
234.3
Sample D
Female
238.4
Hippocampal formation nTPM: 252.3
Samples: 4
Max nTPM: 288.5
Min nTPM: 228.9
Sample A
Male
239.9
Sample B
Male
251.7
Sample C
Female
288.5
Sample D
Female
228.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.