BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:3.3 nTPM
HPA Brain:24.2 nTPM
GTEx:3.3 nTPM
FANTOM5:21.5 Scaled Tags Per Million
Pig:12.6 nTPM
Mouse:69.1 nTPM
Allen mouse:3.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0246810nCPM

CAUDATE - Antibody stainingi
Antibody HPA041180
Glial cells Not detected
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 24.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 22.5
1854 Male, age 80, left hemisphere 26.9
2290 Female, age 72, unknown 24.5
2289 Male, age 61, right hemisphere 24.1
2288 Male, age 75, left hemisphere 22.4
2846 Female, age 79, unknown 22.1
1857 Female, age 85, left hemisphere 21.7
1781 Male, age 74, unknown 20.9
2481 Female, age 94, left hemisphere 17.7
Globus pallidus, externus
nTPM: 20.6
2395 Male, age 75, both hemispheres 22.4
2567 Female, age 72, unknown 22.3
2646 Male, age 61, right hemisphere 20.8
2772 Female, age 79, unknown 19.0
1996 Male, age 80, right hemisphere 18.3
Globus pallidus, internus
nTPM: 23.7
2111 Female, age 85, right hemisphere 31.9
2037 Male, age 80, right hemisphere 23.5
2566 Female, age 72, unknown 23.4
2778 Female, age 91, both hemispheres 22.8
1818 Male, age 74, unknown 22.1
2287 Male, age 75, right hemisphere 22.0
2483 Female, age 94, right hemisphere 20.4
Nucleus accumbens
nTPM: 22.2
2391 Female, age 94, left hemisphere 24.9
1856 Female, age 91, right hemisphere 23.4
2732 Male, age 80, right hemisphere 23.1
2824 Male, age 61, right hemisphere 22.5
2698 Female, age 72, unknown 22.0
2286 Male, age 75, left hemisphere 21.6
1783 Male, age 74, unknown 20.5
1806 Female, age 85, left hemisphere 19.3
Nucleus basalis of Meynert
nTPM: 24.2
2393 Male, age 80, right hemisphere 27.4
2484 Female, age 94, left hemisphere 26.7
2569 Male, age 61, both hemispheres 21.4
2821 Male, age 75, both hemispheres 21.1
Nucleus of the diagonal band
nTPM: 23.1
2195 Female, age 85, both hemispheres 29.8
2029 Male, age 61, right hemisphere 23.2
2775 Male, age 80, right hemisphere 22.8
1979 Male, age 74, unknown 21.7
1812 Female, age 91, both hemispheres 17.7
Putamen
nTPM: 24.2
1838 Male, age 80, right hemisphere 29.0
2489 Female, age 72, unknown 27.1
1829 Male, age 74, unknown 24.9
1937 Female, age 91, right hemisphere 24.4
2466 Female, age 79, unknown 24.3
2482 Female, age 94, left hemisphere 20.2
2647 Male, age 75, left hemisphere 19.7
Septal nuclei
nTPM: 21.4
2394 Male, age 61, left hemisphere 24.7
2199 Male, age 80, right hemisphere 23.3
2009 Female, age 91, both hemispheres 22.2
2031 Female, age 72, unknown 20.5
2629 Female, age 94, right hemisphere 20.1
1960 Male, age 74, unknown 19.6
2059 Female, age 85, both hemispheres 19.6
Stria terminalis, bed nucleus
nTPM: 23.7
2201 Male, age 74, unknown 27.1
2486 Female, age 94, both hemispheres 23.4
1974 Female, age 91, both hemispheres 20.5

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 3.3
GTEx sample id Sample description nTPM
2.52.93.21.64.20.00.51.01.52.02.53.03.54.0
Brain - Caudate (basal ganglia)
Average nTPM: 2.9
Samples: 300

Max nTPM: 4.4
Min nTPM: 1.0
Std nTPM: 0.5
Median nTPM: 2.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 4.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 4.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 4.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 4.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 4.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 4.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 4.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 4.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 3.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 3.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 3.9
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2.93.33.71.74.90.00.51.01.52.02.53.03.54.04.55.0
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.3
Samples: 285

Max nTPM: 5.0
Min nTPM: 1.6
Std nTPM: 0.6
Median nTPM: 3.3
GTEX-148VJ-0011-R6a-SM-H6Q7O 70-79 years, male 5.0
GTEX-1NV5F-0011-R6a-SM-G8LKG 60-69 years, female 5.0
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 4.9
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 4.8
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 4.6
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 4.6
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 4.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 4.5
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 4.5
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 4.5
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 4.4
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2.73.13.41.74.30.00.51.01.52.02.53.03.54.04.55.0
Brain - Putamen (basal ganglia)
Average nTPM: 3.1
Samples: 254

Max nTPM: 5.3
Min nTPM: 0.7
Std nTPM: 0.6
Median nTPM: 3.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 5.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 4.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 4.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 4.6
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 4.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 4.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 4.3
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 4.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 4.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 4.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 4.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.3
FF:10164-103B2 76 years, female 18.3
Nucleus accumbens
Scaled Tags Per Million: 21.5
FF:10037-101F1 23-56 years, mixed 21.5
Putamen
Scaled Tags Per Million: 20.3
FF:10176-103C5 60 years, female 20.3
Globus pallidus
Scaled Tags Per Million: 17.6
FF:10175-103C4 60 years, female 21.1
FF:10161-103A8 76 years, female 14.1

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 12.6
Pig sample Sample description nTPM
12.012.413.011.813.9012345678910111213
 		Caudate
nTPM: 12.6
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 12.1
Sample C Male 12.7
Sample D Male 13.9
10.111.111.511.112.60123456789101112
 		Putamen
nTPM: 10.5
Samples: 4

Max nTPM: 12.6
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 12.6
Sample C Male 11.1
Sample D Male 11.1
8.29.19.97.610.3012345678910
 		Septum
nTPM: 9.0
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.6
Sample A Female 8.4
Sample B Female 10.3
Sample C Male 7.6
Sample D Male 9.8
10.611.411.98.912.50123456789101112
 		Ventral pallidum
nTPM: 11.1
Samples: 4

Max nTPM: 12.5
Min nTPM: 8.9
Sample A Female 11.1
Sample B Female 12.5
Sample C Male 8.9
Sample D Male 11.7

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 69.1
Mouse sample Sample description nTPM
67.868.169.467.168.2010203040506070
 		Caudate putamen
nTPM: 69.1
Samples: 4

Max nTPM: 73.0
Min nTPM: 67.1
Sample A Male 73.0
Sample B Male 68.2
Sample C Female 68.0
Sample D Female 67.1
55.559.363.851.569.905101520253035404550556065
 		Septum
nTPM: 60.0
Samples: 4

Max nTPM: 69.9
Min nTPM: 51.5
Sample A Male 51.5
Sample B Male 69.9
Sample C Female 61.7
Sample D Female 56.9
65.068.270.260.171.8010203040506070
 		Ventral forebrain
nTPM: 67.1
Samples: 4

Max nTPM: 71.8
Min nTPM: 60.1
Sample A Male 71.8
Sample B Male 66.6
Sample C Female 69.7
Sample D Female 60.1

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.3
70546185 Antisense, RP_050623_03_G01, Mouse strain C57BL/6J (56 days, male) 3.3
Pallidum
Expression energy: 1.8
70546185 Antisense, RP_050623_03_G01, Mouse strain C57BL/6J (56 days, male) 1.8

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