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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3BGRL3 is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
428.6
Number of samples
349
Samples
Sample
Description
TPM
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
1517.0
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
1067.4
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
1048.9
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
995.8
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
980.4
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
965.0
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
938.1
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
936.6
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
909.3
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
907.3
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
865.7
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
854.7
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
829.6
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
821.6
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
817.8
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
799.4
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
797.7
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
783.5
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
781.6
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
781.3
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
773.6
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
764.0
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
750.7
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
748.1
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
743.3
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
730.9
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
729.3
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
713.3
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
712.3
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
710.5
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
703.6
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
702.2
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
687.3
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
686.4
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
685.6
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
685.5
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
677.0
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
674.6
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
666.4
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
664.6
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
661.1
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
660.2
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
656.7
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
651.9
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
651.5
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
650.9
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
646.2
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
638.3
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
632.1
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
631.9
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
627.1
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
627.0
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
622.8
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
614.7
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
608.3
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
608.2
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
607.9
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
606.3
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
597.2
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
594.5
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
592.6
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
586.4
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
580.6
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
579.1
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
568.9
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
568.2
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
565.5
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
565.4
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
565.2
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
563.1
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
561.1
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
557.6
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
557.0
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
555.6
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
555.2
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
550.4
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
549.9
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
542.9
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
539.0
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
537.6
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
532.8
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
528.9
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
525.7
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
523.8
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
519.6
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
517.6
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
514.6
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
512.5
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
509.4
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
506.3
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
505.5
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
505.1
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
504.6
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
504.0
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
500.1
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
495.7
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
493.5
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
489.4
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
488.0
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
487.9
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
487.6
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
486.8
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
485.2
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
482.3
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
482.1
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
480.0
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
480.0
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
478.3
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
476.4
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
473.1
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
472.2
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
470.7
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
470.3
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
470.3
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
470.1
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
469.5
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
469.2
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
467.3
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
466.5
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
465.9
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
465.8
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
465.4
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
463.9
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
463.8
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
463.4
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
462.5
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
459.2
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
458.4
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
458.3
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
458.2
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
458.2
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
457.7
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
457.4
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
456.6
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
455.5
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
447.9
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
447.0
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
446.8
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
445.4
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
445.0
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
443.3
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
443.0
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
442.4
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
441.9
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
441.6
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
440.9
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
438.4
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
436.9
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
435.8
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
435.5
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
433.9
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
431.4
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
430.3
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
428.9
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
428.4
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
427.4
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
423.2
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
422.5
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
421.6
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
419.6
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
418.7
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
418.3
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
414.7
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
414.1
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
413.8
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
410.9
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
409.6
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
409.3
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
406.6
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
406.3
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
404.2
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
402.3
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
399.1
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
398.6
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
397.8
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
397.8
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
396.6
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
396.4
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
395.5
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
392.5
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
389.9
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
386.2
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
383.6
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
383.2
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
382.5
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
381.1
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
379.0
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
379.0
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
378.2
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
377.5
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
377.3
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
372.1
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
371.3
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
367.8
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
367.3
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
365.9
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
365.6
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
364.2
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
363.9
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
363.9
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
362.2
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
361.3
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
358.8
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
358.5
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
357.4
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
354.3
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
353.4
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
352.4
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
351.0
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
347.5
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
347.0
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
345.1
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
343.9
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
342.9
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
341.3
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
341.3
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
341.1
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
339.1
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
336.9
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
335.5
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
333.2
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
330.2
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
329.7
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
329.3
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
328.3
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
327.2
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
326.6
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
325.9
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
324.7
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
324.6
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
324.2
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
322.8
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
322.5
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
322.5
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
322.4
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
322.1
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
321.0
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
319.7
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
317.9
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
315.9
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
314.6
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
313.3
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
312.8
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
312.2
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
312.1
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
311.0
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
310.7
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
307.3
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
306.9
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
306.9
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
306.7
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
306.4
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
305.5
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
300.3
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
299.5
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
297.3
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
296.0
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
295.7
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
293.8
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
293.5
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
291.0
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
289.8
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
288.7
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
287.3
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
287.1
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
286.8
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
286.7
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
283.7
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
282.6
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
282.1
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
281.1
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
281.0
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
279.5
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
276.9
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
276.4
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
276.2
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
274.9
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
273.6
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
271.2
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
269.0
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
268.8
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
268.0
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
266.5
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
266.4
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
266.1
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
264.4
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
261.1
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
260.3
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
260.1
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
257.0
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
256.9
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
255.3
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
250.2
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
248.4
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
245.5
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
245.5
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
244.3
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
243.8
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
243.4
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
243.4
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
242.2
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
242.0
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
239.3
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
236.2
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
233.6
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
232.1
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
230.2
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
230.2
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
230.0
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
229.5
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
226.0
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
222.6
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
221.4
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
216.9
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
216.0
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
212.4
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
209.5
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
208.9
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
205.4
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
204.8
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
204.7
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
204.6
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
204.3
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
203.9
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
202.6
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
201.1
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
200.9
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
200.8
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
199.5
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
195.6
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
191.6
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
189.1
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
188.5
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
188.3
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
187.9
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
186.8
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
184.3
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
182.7
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
180.9
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
178.3
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
178.1
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
170.1
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
169.3
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
164.6
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
162.9
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
161.8
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
144.2
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
143.1
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3BGRL3 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
93.4
Number of samples
81
Samples
Sample
Description
TPM
DO46376
0 years, female, NA, stage:III, dead, 1430 days
252.7
DO46368
0 years, female, NA, stage:III, dead, 2879 days
179.8
DO46350
0 years, female, NA, stage:III, dead, 886 days
176.1
DO46576
0 years, female, NA, stage:III, alive, 133 days
168.1
DO46448
0 years, female, NA, stage:III, dead, 654 days
164.7
DO46382
0 years, female, NA, stage:IV, dead, 311 days
145.0
DO46538
0 years, female, NA, stage:III, dead, 1527 days
144.7
DO46528
0 years, female, NA, stage:III, alive, 6139 days
143.7
DO46366
0 years, female, NA, stage:III, dead, 2054 days
141.0
DO46348
0 years, female, NA, stage:IV, dead, 287 days
140.4
DO46468
0 years, female, NA, stage:III, alive, 2776 days
138.1
DO46432
0 years, female, NA, stage:III, alive, 2218 days
133.5
DO46346
0 years, female, NA, stage:III, dead, 1187 days
126.2
DO46581
0 years, female, NA, stage:III, dead, 408 days
122.8
DO46331
0 years, female, NA, stage:III, dead, 612 days
122.8
DO46412
0 years, female, NA, stage:III, dead, 597 days
121.9
DO46372
0 years, female, NA, stage:III, dead, 1326 days
120.7
DO46370
0 years, female, NA, stage:III, dead, 1727 days
120.1
DO46453
0 years, female, NA, stage:III, dead, 3294 days
117.9
DO46586
0 years, female, NA, stage:III, dead, 1019 days
113.0
DO46560
0 years, female, NA, stage:IV, dead, 286 days
112.1
DO46332
0 years, female, NA, stage:III, dead, 689 days
111.3
DO46591
0 years, female, NA, stage:III, dead, 195 days
109.4
DO46333
0 years, female, NA, stage:III, dead, 359 days
109.4
DO46327
0 years, female, NA, stage:III, dead, 184 days
108.3
DO46571
0 years, female, NA, stage:III, dead, 243 days
107.3
DO46354
0 years, female, NA, stage:III, dead, 843 days
106.5
DO46602
0 years, female, NA, stage:III, dead, 205 days
106.5
DO46340
0 years, female, NA, stage:III, dead, 616 days
104.4
DO46374
0 years, female, NA, stage:III, dead, 1409 days
102.1
DO46551
0 years, female, NA, stage:III, dead, 1055 days
99.3
DO46463
0 years, female, NA, stage:III, dead, 2451 days
97.8
DO46334
0 years, female, NA, stage:III, dead, 496 days
94.9
DO46493
0 years, female, NA, stage:IV, alive, 839 days
94.5
DO46329
0 years, female, NA, stage:III, dead, 1699 days
93.9
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
92.1
DO46336
0 years, female, NA, stage:IV, dead, 664 days
91.6
DO46362
0 years, female, NA, stage:III, dead, 1639 days
90.7
DO46364
0 years, female, NA, stage:III, dead, 806 days
90.2
DO46402
0 years, female, NA, stage:III, dead, 511 days
89.2
DO46388
0 years, female, NA, stage:III, dead, 413 days
88.6
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
88.2
DO46518
0 years, female, NA, stage:III, alive, 2960 days
87.2
DO46443
0 years, female, NA, stage:III, dead, 2464 days
84.7
DO46398
0 years, female, NA, stage:III, alive, 437 days
83.4
DO46390
0 years, female, NA, stage:III, dead, 374 days
82.9
DO46386
0 years, female, NA, stage:III, dead, 1162 days
82.7
DO46325
0 years, female, NA, stage:III, dead, 477 days
82.0
DO46330
0 years, female, NA, stage:III, dead, 684 days
81.7
DO46380
0 years, female, NA, stage:III, dead, 1423 days
81.5
DO46546
0 years, female, NA, stage:III, dead, 1889 days
81.2
DO46352
0 years, female, NA, stage:III, dead, 677 days
81.0
DO46378
0 years, female, NA, stage:III, alive, 843 days
80.2
DO46408
0 years, female, NA, stage:III, dead, 489 days
79.7
DO46436
0 years, female, NA, stage:III, alive, 3193 days
76.6
DO46358
0 years, female, NA, stage:III, dead, 423 days
76.3
DO46342
0 years, female, NA, stage:III, dead, 1398 days
73.9
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
71.5
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
71.4
DO46392
0 years, female, NA, stage:III, dead, 628 days
70.2
DO46597
0 years, female, NA, stage:III, dead, 393 days
70.0
DO46328
0 years, female, NA, stage:III, dead, 972 days
69.8
DO46508
0 years, female, NA, stage:III, dead, 2101 days
69.1
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
68.2
DO46400
0 years, female, NA, stage:III, dead, 719 days
67.1
DO46326
0 years, female, NA, stage:III, dead, 701 days
62.8
DO46356
0 years, female, NA, stage:III, dead, 911 days
60.7
DO46344
0 years, female, NA, stage:III, dead, 642 days
57.4
DO46561
0 years, female, NA, stage:III, dead, 195 days
54.8
DO46568
0 years, female, NA, stage:III, dead, 320 days
50.4
DO46404
0 years, female, NA, stage:III, dead, 690 days
48.4
DO46606
0 years, female, NA, stage:III, alive, 804 days
48.3
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
46.2
DO46611
0 years, female, NA, stage:III, dead, 734 days
46.1
DO46566
0 years, female, NA, stage:III, dead, 673 days
45.0
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
43.1
DO46384
0 years, female, NA, stage:III, dead, 614 days
37.0
DO46396
0 years, female, NA, stage:III, dead, 583 days
33.4
DO46533
0 years, female, NA, stage:III, alive, 3667 days
33.0
DO46338
0 years, female, NA, stage:III, dead, 596 days
28.5
DO46588
0 years, female, NA, stage:III, dead, 438 days
22.8
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
1.1
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
0.9
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
0.9
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
0.8
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
0.6
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
0.6
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
0.5
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
0.5
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
0.5
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
0.5
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
0.5
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
0.4
340a3769-3031-41ae-bb08-a2f696_D2
Normal
0.4
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
0.4
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
0.4
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
0.4
e9d416e7-f661-400a-896e-388545_D2
Tumor
0.4
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
0.3
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
0.3
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
0.3
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
0.3
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
0.3
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
0.3
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
0.3
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
0.2
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
0.2
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
0.2
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
0.1
a65d8e76-640f-4341-a561-afbb57_D2
Normal
0.1
1772e913-f62e-446a-8cf3-720348_D2
Tumor
0.1
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
0.0
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
0.0
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
0.0
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
0.0
285fed94-1495-448e-879b-b55de9_D2
Tumor
0.0
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
0.0
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
0.0
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
0.0
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
-0.1
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
-0.1
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
-0.1
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
-0.1
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
-0.1
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
-0.1
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
-0.1
a3a26070-fb84-406a-8280-d555e6_D2
Normal
-0.1
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
-0.1
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
-0.2
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
-0.2
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
-0.2
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
-0.2
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-0.2
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
-0.2
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
-0.2
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
-0.2
161317f3-1a39-438e-af45-cd2502_D2
Tumor
-0.2
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
-0.2
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
-0.2
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
-0.3
21efd60f-6a31-4b98-9477-16a905_D2
Normal
-0.3
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
-0.3
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
-0.3
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
-0.4
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
-0.4
15524912-685a-47ce-a824-567848_D2
Tumor
-0.4
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-0.4
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
-0.4
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
-0.4
2f901c90-617e-46da-9fac-d68369_D2
Tumor
-0.4
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
-0.4
10c2d629-0287-4511-ac25-f29031_D2
Tumor
-0.5
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
-0.5
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
-0.5
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
-0.5
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
-0.6
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
-0.6
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
-0.6
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-0.6
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
-0.6
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
-0.6
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
-0.6
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
-0.6
1a10c200-3895-4648-b951-94f99f_D2
Tumor
-0.7
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
-0.7
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
-0.7
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
-0.7
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
-0.7
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
-0.8
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
-0.8
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
-0.8
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
-0.8
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-0.8
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-0.8
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
-0.9
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
-0.9
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
-0.9
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
-1.0
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
-1.0
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
-1.0
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
-1.1
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
-1.2
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
-1.2
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
-1.2
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
-1.3
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-1.4
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
-1.4
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-1.7
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
-1.9
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.