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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3BGRL3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
171.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1957.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1141.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
718.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
686.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
685.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
618.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
587.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
574.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
570.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
569.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
556.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
545.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
479.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
464.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
457.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
442.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
434.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
432.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
429.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
387.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
367.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
354.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
352.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
350.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
348.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
341.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
334.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
317.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
315.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
311.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
304.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
303.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
297.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
295.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
290.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
286.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
281.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
281.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
279.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
275.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
271.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
269.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
266.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
264.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
263.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
260.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
259.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
257.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
256.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
256.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
255.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
253.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
253.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
250.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
249.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
248.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
248.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
248.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
247.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
246.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
245.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
242.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
241.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
237.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
234.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
234.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
230.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
229.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
229.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
227.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
227.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
226.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
222.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
220.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
220.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
217.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
214.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
213.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
213.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
212.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
211.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
210.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
209.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
208.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
205.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
204.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
204.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
203.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
202.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
202.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
200.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
199.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
199.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
198.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
196.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
195.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
194.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
194.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
193.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
192.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
191.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
189.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
187.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
187.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
187.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
185.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
185.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
183.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
182.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
182.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
181.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
181.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
179.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
179.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
178.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
178.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
177.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
177.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
176.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
175.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
174.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
174.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
173.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
173.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
172.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
172.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
172.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
169.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
169.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
169.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
168.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
168.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
168.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
167.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
167.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
165.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
165.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
165.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
165.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
165.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
164.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
163.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
162.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
162.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
161.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
160.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
159.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
158.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
157.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
157.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
157.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
156.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
155.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
155.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
155.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
154.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
154.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
152.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
151.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
150.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
150.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
150.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
149.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
147.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
146.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
146.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
145.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
145.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
145.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
143.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
142.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
141.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
140.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
139.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
139.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
137.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
137.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
136.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
136.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
135.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
135.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
135.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
135.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
134.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
132.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
132.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
132.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
131.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
131.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
131.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
129.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
128.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
128.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
128.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
127.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
126.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
125.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
125.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
124.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
123.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
122.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
121.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
121.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
121.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
121.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
120.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
120.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
120.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
119.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
119.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
118.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
118.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
117.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
116.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
116.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
116.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
115.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
115.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
115.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
115.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
114.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
113.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
112.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
111.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
110.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
109.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
109.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
109.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
108.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
107.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
107.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
106.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
104.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
104.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
104.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
103.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
103.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
102.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
100.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
100.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
99.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
99.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
98.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
98.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
98.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
98.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
98.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
97.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
97.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
97.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
97.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
97.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
96.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
96.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
96.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
96.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
96.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
95.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
94.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
93.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
93.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
93.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
92.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
92.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
92.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
91.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
91.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
91.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
91.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
90.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
89.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
89.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
89.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
87.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
86.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
86.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
85.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
85.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
85.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
84.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
84.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
84.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
83.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
83.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
83.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
83.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
83.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
83.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
81.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
81.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
81.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
79.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
79.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
79.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
79.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
78.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
78.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
78.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
77.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
77.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
77.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
76.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
76.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
75.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
75.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
75.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
75.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
74.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
73.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
72.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
71.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
71.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
70.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
70.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
69.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
69.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
69.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
68.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
66.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
66.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
65.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
65.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
65.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
65.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
65.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
64.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
63.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
63.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
62.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
62.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
62.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
61.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
61.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
61.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
61.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
60.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
60.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
60.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
59.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
59.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
59.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
55.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
55.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
53.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
53.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
51.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
50.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
48.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
47.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
45.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
44.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
44.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
43.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
39.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3BGRL3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
109.4
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1446.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1261.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
679.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
531.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
428.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
425.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
411.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
400.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
396.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
389.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
341.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
332.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
330.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
310.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
303.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
299.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
250.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
250.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
209.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
208.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
206.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
203.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
201.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
193.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
191.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
188.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
185.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
181.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
180.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
179.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
178.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
176.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
170.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
169.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
168.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
168.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
164.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
156.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
156.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
153.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
152.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
151.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
144.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
144.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
143.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
140.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
136.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
136.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
135.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
132.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
130.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
127.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
126.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
124.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
124.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
123.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
122.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
121.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
119.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
116.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
115.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
114.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
113.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
112.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
111.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
110.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
110.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
107.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
105.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
100.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
100.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
99.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
98.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
96.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
96.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
95.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
94.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
94.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
94.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
92.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
91.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
89.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
89.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
88.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
88.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
87.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
86.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
86.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
86.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
85.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
85.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
85.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
84.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
84.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
83.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
82.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
81.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
80.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
79.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
79.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
79.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
78.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
78.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
78.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
78.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
77.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
76.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
76.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
76.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
76.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
76.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
74.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
73.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
72.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
72.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
72.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
71.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
70.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
70.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
70.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
70.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
69.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
69.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
69.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
67.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
67.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
65.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
64.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
64.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
64.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
64.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
63.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
61.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
61.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
60.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
60.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
58.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
58.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
57.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
57.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
56.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
55.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
55.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
54.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
52.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
52.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
51.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
50.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
50.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
50.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
50.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
50.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
50.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
50.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
48.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
48.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
48.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
47.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
47.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
46.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
46.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
45.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
45.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
45.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
44.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
44.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
43.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
42.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
41.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
41.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
40.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
40.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
40.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
39.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
39.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
38.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
38.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
38.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
38.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
38.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
37.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
37.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
35.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
34.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
33.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
32.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
32.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
32.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
917
Tumor
1.4
492
Normal
1.2
661
Tumor
1.1
211
Tumor
1.0
724
Normal
1.0
311
Tumor
0.9
498
Normal
0.8
283
Tumor
0.8
536
Normal
0.8
814
Normal
0.8
213
Tumor
0.7
943
Tumor
0.7
535
Tumor
0.7
524
Normal
0.7
125
Tumor
0.7
721
Tumor
0.7
978
Normal
0.7
455
Tumor
0.7
823
Tumor
0.7
478
Normal
0.7
383
Tumor
0.6
851
Tumor
0.6
343
Tumor
0.6
434
Normal
0.6
447
Tumor
0.6
857
Tumor
0.6
916
Normal
0.6
268
Normal
0.6
861
Tumor
0.5
141
Tumor
0.5
395
Tumor
0.5
697
Tumor
0.5
713
Tumor
0.5
444
Normal
0.5
375
Tumor
0.5
188
Normal
0.5
223
Tumor
0.5
491
Tumor
0.5
262
Normal
0.5
467
Tumor
0.5
813
Tumor
0.5
195
Tumor
0.5
192
Normal
0.5
493
Tumor
0.5
217
Tumor
0.4
525
Tumor
0.4
355
Tumor
0.4
963
Tumor
0.4
365
Tumor
0.4
185
Tumor
0.4
538
Normal
0.4
966
Normal
0.4
1031
Tumor
0.4
224
Normal
0.4
363
Tumor
0.4
983
Tumor
0.4
516
Normal
0.4
126
Normal
0.4
471
Tumor
0.4
686
Normal
0.4
881
Tumor
0.3
852
Normal
0.3
386
Normal
0.3
672
Normal
0.3
563
Tumor
0.3
421
Tumor
0.3
976
Normal
0.3
778
Normal
0.3
975
Tumor
0.3
384
Normal
0.3
685
Tumor
0.3
1044
Normal
0.3
628
Normal
0.3
925
Tumor
0.3
483
Tumor
0.3
716
Normal
0.3
187
Tumor
0.2
413
Tumor
0.2
212
Normal
0.2
461
Tumor
0.2
558
Normal
0.2
954
Normal
0.2
953
Tumor
0.2
415
Tumor
0.2
914
Normal
0.2
124
Normal
0.2
514
Normal
0.2
984
Normal
0.2
191
Tumor
0.2
883
Tumor
0.2
1042
Normal
0.2
391
Tumor
0.2
362
Normal
0.2
573
Tumor
0.2
913
Tumor
0.2
367
Tumor
0.2
366
Normal
0.2
956
Normal
0.1
571
Tumor
0.1
385
Tumor
0.1
1028
Normal
0.1
662
Normal
0.1
142
Normal
0.1
468
Normal
0.1
135
Tumor
0.1
874
Normal
0.1
284
Normal
0.1
456
Normal
0.1
671
Tumor
0.1
727
Tumor
0.1
344
Normal
0.1
272
Normal
0.1
958
Normal
0.1
574
Normal
0.1
557
Tumor
0.1
432
Normal
0.1
937
Tumor
0.1
786
Normal
0.1
394
Normal
0.1
364
Normal
0.1
1015
Tumor
0.1
312
Normal
0.1
1045
Tumor
0.1
926
Normal
0.1
297
Tumor
0.1
518
Normal
0.1
1043
Tumor
0.1
918
Normal
0.1
944
Normal
0.1
396
Normal
0.1
145
Tumor
0.1
494
Normal
0.1
952
Normal
0.1
352
Normal
0.1
968
Normal
0.0
545
Tumor
0.0
218
Normal
0.0
146
Normal
0.0
526
Normal
0.0
392
Normal
0.0
817
Tumor
0.0
328
Normal
0.0
696
Normal
0.0
451
Tumor
0.0
884
Normal
0.0
816
Normal
0.0
756
Normal
0.0
868
Normal
0.0
231
Tumor
0.0
641
Tumor
0.0
951
Tumor
0.0
488
Normal
0.0
387
Tumor
0.0
427
Tumor
0.0
617
Tumor
0.0
388
Normal
0.0
332
Normal
0.0
955
Tumor
0.0
924
Normal
0.0
537
Tumor
0.0
114
Normal
0.0
923
Tumor
0.0
722
Normal
0.0
214
Normal
0.0
785
Tumor
0.0
1016
Normal
0.0
1026
Normal
0.0
698
Normal
0.0
1032
Normal
0.0
138
Normal
0.0
1027
Tumor
0.0
474
Normal
0.0
567
Tumor
-0.1
714
Normal
-0.1
664
Normal
-0.1
368
Normal
-0.1
528
Normal
-0.1
572
Normal
-0.1
728
Normal
-0.1
416
Normal
-0.1
356
Normal
-0.1
513
Tumor
-0.1
446
Normal
-0.1
863
Tumor
-0.1
648
Normal
-0.1
738
Normal
-0.1
527
Tumor
-0.1
882
Normal
-0.1
111
Normal
-0.1
964
Normal
-0.1
858
Normal
-0.1
412
Normal
-0.1
136
Normal
-0.1
466
Normal
-0.1
866
Normal
-0.1
663
Tumor
-0.1
723
Tumor
-0.1
715
Tumor
-0.1
938
Normal
-0.1
862
Normal
-0.1
232
Normal
-0.1
921
Tumor
-0.1
1014
Normal
-0.1
815
Tumor
-0.1
922
Normal
-0.1
755
Tumor
-0.1
161
Tumor
-0.1
865
Tumor
-0.1
258
Normal
-0.2
1022
Normal
-0.2
912
Normal
-0.2
433
Tumor
-0.2
867
Tumor
-0.2
424
Normal
-0.2
666
Normal
-0.2
873
Tumor
-0.2
695
Tumor
-0.2
497
Tumor
-0.2
278
Normal
-0.2
228
Normal
-0.2
878
Normal
-0.2
354
Normal
-0.2
448
Normal
-0.2
286
Normal
-0.2
864
Normal
-0.2
464
Normal
-0.2
744
Normal
-0.2
546
Normal
-0.2
221
Tumor
-0.2
327
Tumor
-0.2
1021
Tumor
-0.2
777
Tumor
-0.2
472
Normal
-0.2
1046
Normal
-0.2
568
Normal
-0.2
361
Tumor
-0.2
196
Normal
-0.2
277
Tumor
-0.2
515
Tumor
-0.2
376
Normal
-0.2
172
Normal
-0.2
463
Tumor
-0.2
745
Tumor
-0.2
1041
Tumor
-0.2
1013
Tumor
-0.2
222
Normal
-0.2
148
Normal
-0.2
534
Normal
-0.3
137
Tumor
-0.3
227
Tumor
-0.3
112
Tumor
-0.3
342
Normal
-0.3
554
Normal
-0.3
162
Normal
-0.3
484
Normal
-0.3
982
Normal
-0.3
127
Tumor
-0.3
422
Normal
-0.3
414
Normal
-0.3
314
Normal
-0.3
564
Normal
-0.3
462
Normal
-0.3
423
Tumor
-0.3
331
Tumor
-0.3
452
Normal
-0.3
742
Normal
-0.3
261
Tumor
-0.3
915
Tumor
-0.3
977
Tumor
-0.3
824
Normal
-0.3
113
Tumor
-0.3
443
Tumor
-0.3
298
Normal
-0.4
877
Tumor
-0.4
533
Tumor
-0.4
553
Tumor
-0.4
285
Tumor
-0.4
426
Normal
-0.4
428
Normal
-0.4
482
Normal
-0.4
425
Tumor
-0.4
967
Tumor
-0.4
746
Normal
-0.4
911
Tumor
-0.4
957
Tumor
-0.4
358
Normal
-0.4
431
Tumor
-0.4
186
Normal
-0.4
818
Normal
-0.4
465
Tumor
-0.4
627
Tumor
-0.4
128
Normal
-0.4
616
Normal
-0.5
1025
Tumor
-0.5
271
Tumor
-0.5
981
Tumor
-0.5
353
Tumor
-0.5
642
Normal
-0.5
636
Normal
-0.5
517
Tumor
-0.5
351
Tumor
-0.5
357
Tumor
-0.5
647
Tumor
-0.5
257
Tumor
-0.5
737
Tumor
-0.5
477
Tumor
-0.5
665
Tumor
-0.5
393
Tumor
-0.5
618
Normal
-0.5
481
Tumor
-0.6
132
Normal
-0.6
965
Tumor
-0.6
523
Tumor
-0.6
487
Tumor
-0.6
741
Tumor
-0.6
411
Tumor
-0.6
171
Tumor
-0.6
267
Tumor
-0.6
123
Tumor
-0.6
436
Normal
-0.7
147
Tumor
-0.7
615
Tumor
-0.7
313
Tumor
-0.7
341
Tumor
-0.7
473
Tumor
-0.8
131
Tumor
-0.8
635
Tumor
-0.8
435
Tumor
-1.0
445
Tumor
-1.0
743
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.