We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
11.7
nTPM
HPA Brain:
85.5
nTPM
GTEx:
11.7
nTPM
FANTOM5:
2.1
Scaled Tags Per Million
Pig:
85.4
nTPM
Mouse:
54.4
nTPM
Allen mouse:
14.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
85.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 45.7
2666
Male, age 74, left hemisphere
74.2
2019
Male, age 18, unknown
71.6
1827
Male, age 72, unknown
57.7
2828
Female, age 72, unknown
57.3
2586
Male, age 75, left hemisphere
46.6
2219
Male, age 76, both hemispheres
46.1
1870
Female, age 42, unknown
28.0
2411
Female, age 72, unknown
27.1
1833
Male, age 53, unknown
25.0
1830
Male, age 51, unknown
23.8
Dorsal raphe nucleus nTPM: 22.3
2298
Female, age 72, unknown
29.8
2750
Male, age 76, both hemispheres
22.8
1828
Male, age 53, unknown
21.3
2047
Male, age 72, unknown
19.6
2016
Female, age 72, unknown
18.0
Inferior colliculus nTPM: 33.9
2097
Female, age 72, unknown
48.5
1890
Male, age 53, unknown
34.4
1848
Female, age 42, unknown
31.6
2849
Male, age 72, unknown
21.1
Median raphe nucleus nTPM: 30.3
2220
Male, age 76, midline
30.3
Periaquaductal grey, anterior nTPM: 46.1
1795
Male, age 51, unknown
70.2
2502
Female, age 75, unknown
35.9
1947
Male, age 18, unknown
32.4
Periaquaductal grey, dorsal nTPM: 37.1
1831
Male, age 72, unknown
68.5
1840
Male, age 53, unknown
28.2
2464
Female, age 72, unknown
27.3
2850
Male, age 76, both hemispheres
24.5
Periaquaductal grey, lateral nTPM: 26.1
2053
Male, age 18, unknown
34.9
2140
Male, age 76, both hemispheres
25.4
2272
Male, age 74, both hemispheres
17.8
Pretectal area nTPM: 85.5
1816
Male, age 51, unknown
173.6
1944
Female, age 72, unknown
147.8
1817
Female, age 42, unknown
137.8
2007
Male, age 72, unknown
119.1
1815
Male, age 53, unknown
117.3
2667
Female, age 75, unknown
81.0
2224
Female, age 72, unknown
38.3
2273
Male, age 74, both hemispheres
35.8
2407
Male, age 75, both hemispheres
32.4
2316
Male, age 76, right hemisphere
31.0
2825
Male, age 18, unknown
26.9
Red nucleus nTPM: 28.4
2785
Male, age 18, unknown
73.2
2584
Male, age 75, left hemisphere
39.0
1954
Female, age 42, unknown
29.3
2503
Female, age 72, unknown
26.3
2823
Male, age 76, right hemisphere
26.3
1904
Male, age 53, unknown
26.2
1821
Female, age 72, unknown
25.6
1865
Male, age 51, unknown
23.3
2227
Male, age 72, unknown
19.4
2588
Male, age 74, left hemisphere
19.4
2769
Male, age 72, unknown
19.4
2725
Female, age 75, unknown
13.2
Substantia nigra nTPM: 43.6
1889
Female, age 72, unknown
101.0
2665
Male, age 74, both hemispheres
53.7
1916
Female, age 42, unknown
51.8
1941
Male, age 53, unknown
49.0
2583
Male, age 75, right hemisphere
41.0
2409
Female, age 72, unknown
38.0
1851
Male, age 51, unknown
35.7
2241
Male, age 72, unknown
27.0
2590
Female, age 75, unknown
22.8
2699
Male, age 18, unknown
16.1
Superior colliculus nTPM: 71.9
2668
Female, age 75, unknown
196.4
2087
Female, age 72, unknown
115.8
2261
Male, age 18, unknown
72.7
1796
Male, age 53, unknown
68.0
1913
Female, age 42, unknown
63.6
2664
Male, age 75, both hemispheres
56.1
1995
Male, age 72, unknown
53.5
1895
Male, age 76, right hemisphere
38.0
1839
Male, age 51, unknown
31.3
2587
Male, age 74, left hemisphere
23.3
Ventral tegmental area nTPM: 34.1
2410
Female, age 72, unknown
42.1
2218
Male, age 76, both hemispheres
39.4
1915
Female, age 42, unknown
34.4
1942
Male, age 51, unknown
32.8
2223
Female, age 72, unknown
29.5
2021
Male, age 53, unknown
26.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 11.7
Samples: 139
Max nTPM: 63.6
Min nTPM: 0.4
Std nTPM: 9.2
Median nTPM: 9.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
63.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
45.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
36.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
34.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
32.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
31.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
31.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
28.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
23.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
23.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
22.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
21.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
21.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
21.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
21.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
20.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
20.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
20.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
20.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
20.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
19.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
19.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
19.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
18.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
18.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
18.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
17.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
17.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
17.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
17.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
17.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
17.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
16.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
16.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
16.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
16.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
15.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
15.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
15.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
15.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
15.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
15.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
15.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
14.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
14.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
14.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
14.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
14.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
13.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
13.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
13.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
12.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
12.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
12.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
11.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
11.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
11.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
11.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
11.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
11.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
10.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
10.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
10.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
10.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
10.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
10.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
10.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
10.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
9.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
9.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
9.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
9.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
9.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
9.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
9.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
9.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
8.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
8.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
8.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
8.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
8.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
8.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
8.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
7.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
7.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
7.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
7.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
7.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
6.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
6.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
6.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
5.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
5.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
5.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
5.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
5.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
5.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
5.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
5.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
5.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
5.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
5.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
5.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
5.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
4.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
4.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
4.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
4.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
4.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
3.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
3.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
3.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
3.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
3.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
3.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
3.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
3.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
3.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
2.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
2.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
2.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
0.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
0.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.4
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 54.4
Samples: 4
Max nTPM: 59.7
Min nTPM: 50.3
Sample A
Male
50.3
Sample B
Male
53.1
Sample C
Female
59.7
Sample D
Female
54.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.