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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
26.0
nTPM
HPA Brain:
134.8
nTPM
GTEx:
26.0
nTPM
FANTOM5:
60.5
Scaled Tags Per Million
Pig:
151.4
nTPM
Mouse:
94.7
nTPM
Allen mouse:
20.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
134.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 78.8
2148
Female, age 91, left hemisphere
104.5
2621
Female, age 67, right hemisphere
95.1
1898
Male, age 80, left hemisphere
94.8
1855
Male, age 76, left hemisphere
75.3
1911
Female, age 85, right hemisphere
57.1
2529
Female, age 94, left hemisphere
46.1
Dentate gyrus nTPM: 86.2
1927
Female, age 91, both hemispheres
122.3
2531
Female, age 67, both hemispheres
116.1
2010
Male, age 76, both hemispheres
75.1
2246
Female, age 85, both hemispheres
74.4
2528
Male, age 74, both hemispheres
65.4
2530
Female, age 94, left hemisphere
63.6
Entorhinal gyrus nTPM: 93.8
2613
Female, age 94, left hemisphere
122.6
2764
Male, age 80, right hemisphere
107.8
1938
Female, age 85, left hemisphere
93.4
2686
Male, age 75, right hemisphere
92.2
1787
Male, age 76, left hemisphere
88.4
2117
Female, age 91, right hemisphere
58.6
Hippocampus, CA1 nTPM: 92.3
2749
Male, age 80, left hemisphere
142.2
2045
Male, age 76, both hemispheres
98.0
1873
Female, age 85, both hemispheres
85.5
2527
Male, age 74, both hemispheres
70.6
2082
Female, age 91, right hemisphere
65.3
Hippocampus, CA2 nTPM: 76.1
1892
Male, age 76, both hemispheres
90.7
1963
Male, age 80, left hemisphere
86.7
2437
Female, age 94, left hemisphere
83.3
1940
Female, age 85, left hemisphere
81.3
2113
Female, age 91, right hemisphere
64.0
2249
Male, age 74, both hemispheres
50.3
Hippocampus, CA3 nTPM: 92.9
2620
Female, age 94, left hemisphere
155.3
2861
Female, age 67, both hemispheres
113.1
2137
Male, age 80, left hemisphere
102.7
1867
Male, age 76, both hemispheres
73.8
1891
Female, age 85, both hemispheres
59.1
2436
Male, age 74, both hemispheres
53.2
Parahippocampal cortex nTPM: 102.8
2693
Female, age 94, both hemispheres
142.1
2245
Female, age 91, both hemispheres
120.3
2622
Female, age 67, right hemisphere
118.9
1850
Male, age 80, both hemispheres
106.9
2532
Female, age 72, left hemisphere
105.8
2250
Female, age 67, right hemisphere
102.8
1933
Female, age 85, both hemispheres
101.2
1990
Female, age 91, right hemisphere
98.8
2018
Male, age 76, both hemispheres
72.8
2692
Male, age 74, both hemispheres
58.6
Perirhinal gyrus nTPM: 134.8
2521
Female, age 94, right hemisphere
180.4
1847
Female, age 91, left hemisphere
145.1
1794
Male, age 80, right hemisphere
127.7
1841
Female, age 85, right hemisphere
118.3
2848
Male, age 76, right hemisphere
102.4
Subiculum nTPM: 67.1
1977
Female, age 85, both hemispheres
88.4
1901
Male, age 80, both hemispheres
68.6
2438
Female, age 94, left hemisphere
66.8
2619
Male, age 74, both hemispheres
66.1
2729
Female, age 91, right hemisphere
66.1
2042
Male, age 76, both hemispheres
46.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 26.0
Samples: 197
Max nTPM: 69.3
Min nTPM: 0.4
Std nTPM: 16.3
Median nTPM: 23.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
69.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
67.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
65.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
64.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
64.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
62.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
60.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
57.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
56.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
55.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
55.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
51.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
51.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
51.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
50.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
50.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
49.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
48.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
47.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
47.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
46.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
46.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
46.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
46.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
45.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
45.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
45.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
44.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
43.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
43.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
43.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
42.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
42.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
41.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
41.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
40.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
40.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
40.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
40.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
40.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
40.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
39.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
39.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
39.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
39.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
38.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
38.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
38.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
38.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
38.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
38.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
38.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
37.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
37.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
36.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
36.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
36.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
36.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
36.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
35.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
35.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
35.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
35.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
35.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
34.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
34.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
34.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
34.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
34.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
33.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
33.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
33.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
33.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
32.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
32.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
30.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
30.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
30.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
29.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
29.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
29.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
29.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
29.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
28.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
28.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
28.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
28.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
28.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
28.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
28.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
27.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
27.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
27.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
27.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
26.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
25.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
25.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
24.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
23.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
23.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
23.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
23.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
23.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
23.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
23.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
22.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
21.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
21.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
21.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
20.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
20.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
20.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
19.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
19.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
19.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
19.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
18.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
18.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
18.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
18.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
18.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
17.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
17.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
17.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
17.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
17.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
16.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
16.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
16.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
15.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
15.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
15.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
15.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
15.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
15.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
15.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
14.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
14.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
14.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
13.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
13.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
13.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
13.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
13.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
13.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
12.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
12.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
12.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
12.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
11.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
11.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
11.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
11.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
11.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
11.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
11.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
11.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
10.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
10.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
9.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
9.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
9.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
9.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
8.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
8.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
8.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
8.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
7.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
6.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
6.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
6.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
6.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
6.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
5.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
5.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
5.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
5.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
5.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
5.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
5.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
5.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
4.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
3.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
3.5
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
3.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
3.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
3.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
3.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
3.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
2.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
2.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
2.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
2.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
1.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
1.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
1.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
0.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
94.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 94.8
Samples: 4
Max nTPM: 122.5
Min nTPM: 76.9
Sample A
Male
89.8
Sample B
Male
89.8
Sample C
Female
76.9
Sample D
Female
122.5
Hippocampal formation nTPM: 81.1
Samples: 4
Max nTPM: 101.0
Min nTPM: 61.4
Sample A
Male
61.4
Sample B
Male
92.5
Sample C
Female
101.0
Sample D
Female
69.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.