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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
86.9
Sample id
Sample description
nTPM
Amygdala nTPM: 67.9
2814
Male, age 76, right hemisphere
149.4
2517
Female, age 94, left hemisphere
58.8
1987
Female, age 91, left hemisphere
58.3
2695
Female, age 67, right hemisphere
39.3
2514
Male, age 75, right hemisphere
34.0
Basal amygdala nTPM: 86.9
1955
Male, age 76, both hemispheres
126.2
2243
Female, age 91, right hemisphere
110.5
2685
Female, age 94, left hemisphere
96.7
2110
Male, age 80, left hemisphere
78.2
2827
Female, age 67, right hemisphere
67.5
2609
Male, age 75, right hemisphere
42.5
Central amygdala nTPM: 78.0
1905
Male, age 76, both hemispheres
149.4
2239
Male, age 80, left hemisphere
82.2
2826
Female, age 94, left hemisphere
75.1
2701
Female, age 91, right hemisphere
46.0
2515
Male, age 75, right hemisphere
37.5
Corticomedial amygdala nTPM: 81.5
2240
Male, age 76, both hemispheres
107.5
2242
Female, age 91, right hemisphere
93.2
2429
Female, age 94, left hemisphere
87.5
2829
Male, age 80, left hemisphere
87.1
2535
Female, age 67, right hemisphere
74.5
2428
Male, age 75, right hemisphere
39.4
Lateral amygdala nTPM: 72.8
1883
Male, age 76, both hemispheres
129.4
2534
Female, age 94, left hemisphere
106.8
2256
Male, age 80, left hemisphere
69.4
2255
Female, age 91, right hemisphere
65.3
2830
Female, age 67, right hemisphere
38.5
2516
Male, age 75, right hemisphere
27.0
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 23.1
Samples: 152
Max nTPM: 76.8
Min nTPM: 0.6
Std nTPM: 13.1
Median nTPM: 21.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
76.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
70.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
57.5
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
55.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
49.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
47.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
47.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
45.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
44.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
44.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
43.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
42.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
41.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
41.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
41.2
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
40.0
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
39.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
39.3
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
38.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
38.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
37.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
37.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
37.0
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
36.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
36.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
36.0
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
35.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
34.5
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
34.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
33.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
33.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
33.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
33.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
32.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
32.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
32.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
32.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
31.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
31.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
31.0
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
30.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
30.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
30.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
30.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
28.6
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
27.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
27.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
27.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
27.3
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
27.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
27.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
26.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
26.7
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
26.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
25.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
25.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
25.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
25.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
24.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
24.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
23.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
23.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
23.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
23.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
23.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
23.0
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
22.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
22.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
22.4
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
22.4
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
22.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
22.4
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
22.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
21.4
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
21.3
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
21.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
21.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
21.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
20.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
20.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
20.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
20.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
20.0
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
19.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
19.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
19.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
19.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
18.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
18.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
18.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
17.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
17.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
16.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
16.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
16.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
15.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
15.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
15.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
15.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
15.5
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
15.4
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
15.3
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
14.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
14.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
14.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
14.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
14.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
14.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
13.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
13.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
13.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
13.3
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
13.3
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
13.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
12.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
12.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
12.7
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
12.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
12.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
12.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
12.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
11.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
11.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
11.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
11.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
11.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
10.9
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
10.7
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
10.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
10.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
10.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
10.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
10.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
9.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
9.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
9.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
9.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
9.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
9.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
8.9
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
7.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
7.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
6.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
6.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
5.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
5.7
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
5.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
4.9
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
1.6
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
1.5
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
0.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
0.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
80.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 80.0
Samples: 4
Max nTPM: 84.8
Min nTPM: 74.8
Sample A
Male
84.8
Sample B
Male
74.8
Sample C
Female
83.5
Sample D
Female
76.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.