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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
78.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 33.6
1984
Male, age 76, both hemispheres
49.4
2301
Female, age 85, both hemispheres
37.4
2188
Female, age 91, both hemispheres
27.2
2090
Male, age 80, both hemispheres
20.4
Dorsal cochlear nucleus nTPM: 26.6
2370
Male, age 61, both hemispheres
33.6
2058
Male, age 76, both hemispheres
31.7
2187
Female, age 91, both hemispheres
28.6
2378
Male, age 80, both hemispheres
19.9
2802
Male, age 74, right hemisphere
19.2
Dorsal tegmental nucleus nTPM: 26.1
2083
Male, age 80, both hemispheres
31.6
1936
Male, age 76, left hemisphere
31.3
2358
Male, age 61, both hemispheres
27.2
2326
Male, age 74, both hemispheres
14.4
Dorsolateral tegmental area nTPM: 25.6
2141
Male, age 76, both hemispheres
38.1
2751
Female, age 85, both hemispheres
36.6
2654
Male, age 80, both hemispheres
28.6
2360
Male, age 74, both hemispheres
15.1
2337
Male, age 61, both hemispheres
9.7
Kolliker-Fuse nucleus nTPM: 27.8
2793
Female, age 91, left hemisphere
38.7
2163
Male, age 80, both hemispheres
23.7
2315
Male, age 76, right hemisphere
21.1
Lateral lemniscal nuclei nTPM: 70.1
2453
Male, age 74, right hemisphere
93.8
2036
Male, age 80, both hemispheres
73.5
2169
Male, age 76, both hemispheres
69.7
2746
Female, age 85, left hemisphere
63.1
2320
Female, age 91, left hemisphere
50.2
Lateral parabrachial nucleus nTPM: 37.6
2139
Female, age 85, right hemisphere
70.6
2790
Male, age 61, both hemispheres
35.0
2013
Male, age 80, both hemispheres
33.5
2792
Male, age 76, both hemispheres
11.2
Lateral vestibular nucleus nTPM: 24.2
2184
Male, age 76, both hemispheres
25.2
2311
Male, age 80, both hemispheres
23.2
Locus coeruleus nTPM: 44.3
2123
Female, age 91, both hemispheres
57.8
2720
Male, age 74, both hemispheres
56.9
1980
Male, age 76, both hemispheres
44.8
2014
Male, age 55, unknown
40.3
2162
Male, age 80, both hemispheres
38.5
2317
Female, age 72, unknown
37.2
2788
Male, age 74, unknown
34.5
Medial parabrachial nucleus nTPM: 36.1
2463
Female, age 85, right hemisphere
48.1
2854
Male, age 80, both hemispheres
37.7
2156
Male, age 61, both hemispheres
33.9
2786
Male, age 76, both hemispheres
31.6
2170
Female, age 91, both hemispheres
29.0
Medial periolivary nuclei nTPM: 63.2
2171
Female, age 85, both hemispheres
103.2
2063
Male, age 76, both hemispheres
72.1
2791
Male, age 74, right hemisphere
59.4
2458
Female, age 91, both hemispheres
45.7
2081
Male, age 80, both hemispheres
35.4
Motor facial nucleus nTPM: 64.4
2062
Male, age 76, both hemispheres
80.6
2365
Male, age 74, right hemisphere
73.9
2327
Male, age 80, both hemispheres
73.3
2697
Female, age 85, both hemispheres
61.3
2795
Female, age 91, both hemispheres
60.8
2126
Male, age 61, both hemispheres
36.5
Motor trigeminal nucleus nTPM: 43.5
2560
Male, age 74, both hemispheres
60.6
2079
Male, age 80, both hemispheres
59.1
2335
Male, age 61, both hemispheres
35.5
2321
Female, age 91, both hemispheres
32.1
2309
Male, age 76, both hemispheres
30.4
Nuclei of the trapezoid body nTPM: 77.7
2735
Female, age 85, both hemispheres
106.2
2159
Male, age 61, both hemispheres
95.6
1983
Male, age 76, both hemispheres
70.4
2368
Female, age 91, both hemispheres
58.5
2166
Male, age 80, both hemispheres
57.6
Nucleus raphe magnus nTPM: 78.1
2172
Female, age 85, both hemispheres
112.7
2455
Male, age 74, both hemispheres
94.8
2160
Male, age 61, both hemispheres
91.2
2328
Male, age 80, both hemispheres
63.9
2459
Female, age 91, both hemispheres
53.5
2051
Male, age 76, both hemispheres
52.2
Paramedian reticular nucleus nTPM: 40.8
2050
Female, age 85, both hemispheres
69.3
2313
Male, age 61, both hemispheres
43.5
2057
Male, age 80, both hemispheres
31.0
2052
Male, age 76, both hemispheres
19.5
Pedunculopontine tegmental nucleus nTPM: 31.9
1921
Female, age 85, both hemispheres
40.1
2334
Male, age 80, both hemispheres
30.1
2338
Male, age 61, both hemispheres
25.5
Pontine nuclei nTPM: 60.2
2787
Female, age 85, both hemispheres
99.0
2727
Male, age 61, right hemisphere
73.0
1863
Male, age 55, unknown
64.6
1968
Male, age 76, left hemisphere
63.0
2109
Female, age 72, unknown
58.7
2454
Male, age 74, left hemisphere
49.5
2115
Male, age 80, left hemisphere
44.7
2319
Female, age 91, both hemispheres
29.5
Pontine raphe nucleus nTPM: 48.7
2122
Female, age 85, midline
67.8
2853
Male, age 76, midline
29.5
Posteroventral cochlear nucleus nTPM: 26.2
2752
Female, age 85, both hemispheres
51.8
2070
Male, age 76, both hemispheres
34.0
2371
Male, age 61, both hemispheres
30.9
2341
Male, age 80, both hemispheres
11.6
2135
Female, age 91, both hemispheres
2.6
Principal sensory trigeminal nucleus nTPM: 54.9
2158
Male, age 61, both hemispheres
90.2
2008
Male, age 80, left hemisphere
69.7
2367
Female, age 91, left hemisphere
38.6
2324
Male, age 76, both hemispheres
21.2
Reticular pontine nucleus, caudal nTPM: 47.3
2332
Male, age 80, right hemisphere
74.8
2092
Male, age 76, both hemispheres
47.5
2457
Female, age 91, both hemispheres
46.4
2559
Male, age 74, both hemispheres
20.3
Reticular pontine nucleus, oral nTPM: 44.4
2361
Male, age 74, both hemispheres
58.0
2012
Female, age 85, both hemispheres
57.9
2366
Female, age 91, both hemispheres
37.1
2167
Male, age 76, both hemispheres
35.6
1939
Male, age 80, both hemispheres
33.2
Reticulotegmental nucleus nTPM: 40.2
2325
Male, age 76, both hemispheres
47.9
2333
Male, age 80, both hemispheres
41.0
2452
Male, age 74, both hemispheres
40.0
2322
Female, age 91, both hemispheres
32.0
Spinal trigeminal nucleus, oral nTPM: 37.5
1978
Male, age 76, both hemispheres
46.3
2737
Female, age 85, both hemispheres
40.4
2164
Male, age 80, both hemispheres
26.0
Subcoeruleus area nTPM: 42.9
2089
Male, age 76, left hemisphere
59.1
2323
Female, age 91, left hemisphere
50.8
1958
Male, age 80, both hemispheres
49.0
2451
Male, age 74, both hemispheres
29.2
2369
Female, age 85, left hemisphere
26.6
Superior olive nTPM: 59.1
1875
Female, age 85, both hemispheres
75.7
2329
Male, age 80, right hemisphere
59.8
2561
Female, age 91, both hemispheres
56.5
2364
Male, age 74, right hemisphere
55.1
2020
Male, age 76, both hemispheres
48.4
Ventral periolivary nuclei nTPM: 68.4
2130
Female, age 85, both hemispheres
95.9
2165
Male, age 80, both hemispheres
72.8
2794
Female, age 91, left hemisphere
61.4
2023
Male, age 76, both hemispheres
43.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 51.0
2449
Male, age 74, both hemispheres
84.7
1959
Male, age 76, both hemispheres
57.0
2161
Male, age 80, both hemispheres
53.9
2840
Female, age 85, both hemispheres
42.6
2456
Female, age 91, both hemispheres
41.9
2359
Male, age 61, both hemispheres
25.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
85.2
Pig sample
Sample description
nTPM
Pons nTPM: 85.2
Samples: 4
Max nTPM: 242.7
Min nTPM: 25.4
Sample A
Female
242.7
Sample B
Female
25.4
Sample C
Male
27.6
Sample D
Male
45.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.