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                                          • SUMMARY

                                          • TISSUE

                                          • BRAIN

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                                          • SPRY2
                                          TISSUE PRIMARY DATA RETINA Show tissue menu
                                          ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
                                          DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
                                          NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
                                          SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                          ANTIBODIES
                                          AND
                                          VALIDATION
                                          Dictionary
                                          Tissue proteome
                                          Eye
                                          Retina
                                          Tissue methods
                                          RETINA - Expression summary
                                          Protein expressioni

                                          On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                          No data
                                          RNA expressioni

                                          A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

                                          Scroll down to view mRNA expression data in more detail.

                                          Consensus:31.7 nTPM
                                          GTEx:31.7 nTPM
                                          FANTOM5:64.0 Scaled Tags Per Million
                                          EYE - SINGLE CELL RNA EXPRESSION
                                          Explore single cell type data
                                          Retinal amacrine cellsRetinal horizontal cellsRetinal ganglion cellsRetinal bipolar cellsRod photoreceptor cellsCone photoreceptor cellsMüller gliaSchwann cellsMelanocytesRetinal pigment epithelial cellsOcular epithelial cellsLacrimal acinar cellsConjunctival goblet cellsVascular endothelial cellsLymphatic endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMast cellsNeutrophilsMonocytesMacrophagesT-cellsB-cellsPlasma cellsNK-cells050100150200nCPM

                                          RETINA - GTEx RNA-seqi

                                          RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                          Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

                                          Max subtype nTPMi

                                          Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                          31.7
                                          GTEx sample id Sample description nTPM
                                          23.829.636.115.052.0051015202530354045505560
                                          23.829.636.115.052.0051015202530354045505560
                                          Retina
                                          Average nTPM: 31.7
                                          Samples: 105

                                          Max nTPM: 61.2
                                          Min nTPM: 15.0
                                          Std nTPM: 10.5
                                          Median nTPM:
                                          137_1 83 years, male 61.2
                                          4_1 88 years, female 60.3
                                          43_1 64 years, female 60.1
                                          452_1 88 years, female 52.0
                                          17_1 71 years, male 51.7
                                          308_1 70 years, female 51.2
                                          117_1 61 years, male 51.1
                                          495_1 57 years, female 50.5
                                          404_1 82 years, female 49.3
                                          6_1 73 years, female 48.7
                                          317_1 60 years, male 47.6
                                          99_1 64 years, male 47.1
                                          42_1 85 years, male 47.0
                                          173_1 67 years, male 46.5
                                          354_1 81 years, female 46.3
                                          490_1 67 years, female 45.5
                                          375_1 74 years, female 44.6
                                          218_1 71 years, female 44.0
                                          351_1 91 years, male 42.5
                                          315_1 62 years, female 40.7
                                          162_1 79 years, female 39.6
                                          319_1 81 years, male 39.2
                                          120_1 70 years, female 39.0
                                          347_1 72 years, male 38.1
                                          320_1 89 years, female 37.6
                                          109_1 81 years, female 37.5
                                          350_1 84 years, female 36.1
                                          145_1 84 years, male 36.0
                                          41_1 94 years, female 35.4
                                          237_1 82 years, male 34.9
                                          295_1 61 years, female 34.8
                                          307_1 66 years, female 34.6
                                          389_1 86 years, female 34.4
                                          526_1 61 years, male 34.2
                                          314_1 67 years, male 34.1
                                          394_1 75 years, female 33.5
                                          254_1 77 years, female 33.4
                                          288_1 66 years, female 33.3
                                          386_1 76 years, male 33.3
                                          491_1 89 years, female 33.3
                                          353_1 82 years, female 32.7
                                          379_1 60 years, male 32.1
                                          119_1 70 years, female 31.7
                                          384_1 83 years, male 31.7
                                          501_1 88 years, male 31.7
                                          349_1 83 years, male 31.5
                                          266_1 85 years, male 31.1
                                          35_1 74 years, female 30.6
                                          243_1 75 years, male 30.4
                                          291_1 76 years, male 30.4
                                          335_1 73 years, female 29.8
                                          311_1 78 years, male 29.7
                                          480_1 63 years, male 29.6
                                          318_1 68 years, male 29.0
                                          376_1 75 years, female 29.0
                                          406_1 79 years, male 29.0
                                          142_1 61 years, female 28.9
                                          265_1 87 years, male 28.9
                                          313_1 79 years, female 28.9
                                          293_1 68 years, female 28.8
                                          189_1 76 years, male 28.7
                                          321_1 62 years, female 28.5
                                          415_1 77 years, female 28.5
                                          264_1 73 years, female 28.4
                                          356_1 87 years, female 28.4
                                          447_1 81 years, male 27.7
                                          322_1 76 years, male 26.7
                                          324_1 76 years, male 26.6
                                          518_1 75 years, female 26.5
                                          9_1 66 years, female 25.8
                                          2_1 77 years, female 25.7
                                          89_1 63 years, male 25.7
                                          32_1 67 years, male 25.0
                                          503_1 68 years, male 25.0
                                          425_1 59 years, female 24.8
                                          348_1 84 years, male 24.4
                                          115_1 83 years, male 24.0
                                          139_1 64 years, female 23.8
                                          355_1 70 years, female 23.8
                                          377_1 82 years, female 23.5
                                          172_1 72 years, female 23.4
                                          18_1 88 years, male 23.1
                                          217_1 76 years, male 22.6
                                          126_1 63 years, male 22.1
                                          153_1 70 years, female 21.6
                                          414_1 84 years, female 21.3
                                          517_1 88 years, male 21.3
                                          499_1 55 years, female 20.6
                                          405_1 91 years, male 20.4
                                          149_1 88 years, male 20.2
                                          292_1 71 years, male 20.2
                                          466_1 57 years, female 20.2
                                          177_1 74 years, male 20.1
                                          251_1 78 years, male 20.1
                                          468_1 89 years, male 20.0
                                          163_1 78 years, male 19.9
                                          352_1 62 years, male 19.3
                                          81_1 67 years, male 19.2
                                          229_1 69 years, female 18.9
                                          316_1 62 years, male 18.9
                                          246_1 77 years, male 18.3
                                          506_1 65 years, male 18.2
                                          396_1 62 years, male 17.7
                                          413_1 59 years, female 15.5
                                          286_1 68 years, female 15.0
                                          Show allShow less

                                          RETINA - FANTOM5 CAGEi

                                          RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                          Max subtype Scaled Tags Per Millioni

                                          Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

                                          64.0
                                          FANTOM5 sample id Sample description Scaled Tags Per Million
                                          Retina
                                          Scaled Tags Per Million: 64.0
                                          FF:10030-101E3 24-65 years, mixed 64.0

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