MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.5 nTPM
HPA Brain:42.3 nTPM
GTEx:30.5 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:22.0 nTPM
Mouse:18.5 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells020406080100120140nCPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
2586 Male, age 75, left hemisphere 62.7
2019 Male, age 18, unknown 47.7
2828 Female, age 72, unknown 41.2
2666 Male, age 74, left hemisphere 38.6
1827 Male, age 72, unknown 37.7
1870 Female, age 42, unknown 36.1
1833 Male, age 53, unknown 34.7
1830 Male, age 51, unknown 33.7
2411 Female, age 72, unknown 32.3
2219 Male, age 76, both hemispheres 28.5
Dorsal raphe nucleus
nTPM: 35.8
2016 Female, age 72, unknown 38.4
1828 Male, age 53, unknown 37.9
2750 Male, age 76, both hemispheres 36.1
2047 Male, age 72, unknown 35.9
2298 Female, age 72, unknown 30.4
Inferior colliculus
nTPM: 35.2
1848 Female, age 42, unknown 36.7
2097 Female, age 72, unknown 36.4
1890 Male, age 53, unknown 36.3
2849 Male, age 72, unknown 31.5
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Periaquaductal grey, anterior
nTPM: 36.5
1947 Male, age 18, unknown 39.3
1795 Male, age 51, unknown 36.4
2502 Female, age 75, unknown 33.6
Periaquaductal grey, dorsal
nTPM: 33.3
2850 Male, age 76, both hemispheres 43.8
1840 Male, age 53, unknown 30.6
2464 Female, age 72, unknown 30.3
1831 Male, age 72, unknown 28.4
Periaquaductal grey, lateral
nTPM: 32.6
2140 Male, age 76, both hemispheres 40.7
2053 Male, age 18, unknown 29.0
2272 Male, age 74, both hemispheres 28.1
Pretectal area
nTPM: 34.6
1817 Female, age 42, unknown 46.7
2007 Male, age 72, unknown 43.0
2407 Male, age 75, both hemispheres 36.1
1816 Male, age 51, unknown 34.7
2316 Male, age 76, right hemisphere 33.7
1815 Male, age 53, unknown 32.6
2667 Female, age 75, unknown 32.5
2273 Male, age 74, both hemispheres 31.9
1944 Female, age 72, unknown 31.6
2825 Male, age 18, unknown 30.5
2224 Female, age 72, unknown 27.5
Red nucleus
nTPM: 42.3
1865 Male, age 51, unknown 48.4
1954 Female, age 42, unknown 48.2
1821 Female, age 72, unknown 46.7
1904 Male, age 53, unknown 45.8
2785 Male, age 18, unknown 45.5
2588 Male, age 74, left hemisphere 44.2
2227 Male, age 72, unknown 43.8
2769 Male, age 72, unknown 43.3
2503 Female, age 72, unknown 37.7
2725 Female, age 75, unknown 37.1
2823 Male, age 76, right hemisphere 35.1
2584 Male, age 75, left hemisphere 32.5
Substantia nigra
nTPM: 32.5
2583 Male, age 75, right hemisphere 41.8
1889 Female, age 72, unknown 39.5
1941 Male, age 53, unknown 33.4
1851 Male, age 51, unknown 32.5
1916 Female, age 42, unknown 31.5
2590 Female, age 75, unknown 31.3
2699 Male, age 18, unknown 31.2
2665 Male, age 74, both hemispheres 29.1
2241 Male, age 72, unknown 27.7
2409 Female, age 72, unknown 27.0
Superior colliculus
nTPM: 35.1
2668 Female, age 75, unknown 46.2
2664 Male, age 75, both hemispheres 44.0
1995 Male, age 72, unknown 38.9
1796 Male, age 53, unknown 35.1
1895 Male, age 76, right hemisphere 33.8
1839 Male, age 51, unknown 32.2
2587 Male, age 74, left hemisphere 31.6
2261 Male, age 18, unknown 30.6
2087 Female, age 72, unknown 29.6
1913 Female, age 42, unknown 29.5
Ventral tegmental area
nTPM: 32.1
2223 Female, age 72, unknown 34.8
1942 Male, age 51, unknown 33.4
2410 Female, age 72, unknown 32.1
2021 Male, age 53, unknown 31.7
2218 Male, age 76, both hemispheres 30.4
1915 Female, age 42, unknown 30.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.5
GTEx sample id Sample description nTPM
22.627.234.812.951.20102030405060708090
Brain - Substantia nigra
Average nTPM: 30.5
Samples: 183

Max nTPM: 97.9
Min nTPM: 12.9
Std nTPM: 13.2
Median nTPM: 27.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 97.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 96.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 89.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 76.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 71.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 59.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 58.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 58.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 55.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 55.1
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 51.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.0
FF:10158-103A5 76 years, female 72.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.0
Pig sample Sample description nTPM
17.619.120.417.120.502468101214161820
 		Substantia nigra
nTPM: 19.0
Samples: 4

Max nTPM: 20.5
Min nTPM: 17.1
Sample A Female 20.5
Sample B Female 17.8
Sample C Male 17.1
Sample D Male 20.4
20.522.023.420.223.80246810121416182022
 		Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 23.8
Min nTPM: 20.2
Sample A Female 20.2
Sample B Female 20.6
Sample C Male 23.8
Sample D Male 23.3
15.715.918.715.421.502468101214161820
 		Periaqueductal gray
nTPM: 17.6
Samples: 3

Max nTPM: 21.5
Min nTPM: 15.4
Sample B Female 21.5
Sample C Male 15.9
Sample D Male 15.4
19.320.922.814.927.802468101214161820222426
 		Superior colliculi
nTPM: 21.1
Samples: 4

Max nTPM: 27.8
Min nTPM: 14.9
Sample A Female 27.8
Sample B Female 14.9
Sample C Male 21.1
Sample D Male 20.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.5
Mouse sample Sample description nTPM
16.418.620.716.020.902468101214161820
 		Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 20.9
Min nTPM: 16.0
Sample A Male 20.6
Sample B Male 20.9
Sample C Female 16.0
Sample D Female 16.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69885720 Antisense, RP_050512_03_C10, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo