HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:30.2 nTPM
HPA Brain:38.2 nTPM
GTEx:30.2 nTPM
FANTOM5:94.0 Scaled Tags Per Million
Pig:36.8 nTPM
Mouse:34.9 nTPM
Allen mouse:3.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells020406080100120140nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody CAB037205
Glial cells Low
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 38.2
Sample id Sample description nTPM
Hippocampus
nTPM: 36.2
1855 Male, age 76, left hemisphere 42.8
1898 Male, age 80, left hemisphere 40.7
2529 Female, age 94, left hemisphere 36.1
2148 Female, age 91, left hemisphere 34.4
2621 Female, age 67, right hemisphere 33.6
1911 Female, age 85, right hemisphere 29.6
Dentate gyrus
nTPM: 33.2
2010 Male, age 76, both hemispheres 41.5
2530 Female, age 94, left hemisphere 35.9
1927 Female, age 91, both hemispheres 33.4
2528 Male, age 74, both hemispheres 31.0
2246 Female, age 85, both hemispheres 30.3
2531 Female, age 67, both hemispheres 27.3
Entorhinal gyrus
nTPM: 34.8
1938 Female, age 85, left hemisphere 40.7
2117 Female, age 91, right hemisphere 37.3
2686 Male, age 75, right hemisphere 36.9
2764 Male, age 80, right hemisphere 36.1
2613 Female, age 94, left hemisphere 29.5
1787 Male, age 76, left hemisphere 28.0
Hippocampus, CA1
nTPM: 36.4
2749 Male, age 80, left hemisphere 55.6
2045 Male, age 76, both hemispheres 38.5
1873 Female, age 85, both hemispheres 33.3
2527 Male, age 74, both hemispheres 31.0
2082 Female, age 91, right hemisphere 23.5
Hippocampus, CA2
nTPM: 33.8
1963 Male, age 80, left hemisphere 42.1
1892 Male, age 76, both hemispheres 40.4
2437 Female, age 94, left hemisphere 33.6
2249 Male, age 74, both hemispheres 30.8
1940 Female, age 85, left hemisphere 30.2
2113 Female, age 91, right hemisphere 25.6
Hippocampus, CA3
nTPM: 38.2
1867 Male, age 76, both hemispheres 60.3
2137 Male, age 80, left hemisphere 44.2
2861 Female, age 67, both hemispheres 35.0
2620 Female, age 94, left hemisphere 33.8
1891 Female, age 85, both hemispheres 31.0
2436 Male, age 74, both hemispheres 24.9
Parahippocampal cortex
nTPM: 32.9
1933 Female, age 85, both hemispheres 37.2
2532 Female, age 72, left hemisphere 36.9
1850 Male, age 80, both hemispheres 34.9
2622 Female, age 67, right hemisphere 34.8
2250 Female, age 67, right hemisphere 32.9
1990 Female, age 91, right hemisphere 32.1
2693 Female, age 94, both hemispheres 31.6
2692 Male, age 74, both hemispheres 31.1
2245 Female, age 91, both hemispheres 30.6
2018 Male, age 76, both hemispheres 27.4
Perirhinal gyrus
nTPM: 31.9
1841 Female, age 85, right hemisphere 35.7
1794 Male, age 80, right hemisphere 33.6
1847 Female, age 91, left hemisphere 31.7
2848 Male, age 76, right hemisphere 30.3
2521 Female, age 94, right hemisphere 28.0
Subiculum
nTPM: 32.7
2042 Male, age 76, both hemispheres 36.9
1977 Female, age 85, both hemispheres 35.6
1901 Male, age 80, both hemispheres 35.2
2619 Male, age 74, both hemispheres 31.8
2729 Female, age 91, right hemisphere 31.0
2438 Female, age 94, left hemisphere 25.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 30.2
GTEx sample id Sample description nTPM
24.028.533.313.946.70102030405060708090100
Brain - Hippocampus
Average nTPM: 30.2
Samples: 255

Max nTPM: 107.0
Min nTPM: 13.9
Std nTPM: 10.8
Median nTPM: 28.5
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 107.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 79.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 78.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 74.8
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 72.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 67.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 66.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 58.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 55.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 48.7
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 46.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 94.0
FF:10169-103B7 60 years, female 104.8
FF:10153-102I9 76 years, female 83.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 36.8
Pig sample Sample description nTPM
28.830.433.825.030.90510152025303540
 		Subiculum
nTPM: 32.1
Samples: 4

Max nTPM: 42.4
Min nTPM: 25.0
Sample A Female 42.4
Sample B Female 30.9
Sample C Male 30.0
Sample D Male 25.0
Dorsal hippocampus
nTPM: 28.1
Samples: 4

Max nTPM: 31.8
Min nTPM: 24.2
Sample A Female 31.4
Sample B Female 25.1
Sample C Male 31.8
Sample D Male 24.2
35.037.439.131.540.80510152025303540
 		Entorhinal cortex
nTPM: 36.8
Samples: 4

Max nTPM: 40.8
Min nTPM: 31.5
Sample A Female 36.2
Sample B Female 40.8
Sample C Male 31.5
Sample D Male 38.5
23.526.329.123.129.60246810121416182022242628
 		Ventral hippocampus
nTPM: 26.3
Samples: 4

Max nTPM: 29.6
Min nTPM: 23.1
Sample A Female 23.1
Sample B Female 23.6
Sample C Male 29.6
Sample D Male 28.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 34.9
Mouse sample Sample description nTPM
33.434.335.832.438.705101520253035
 		Entorhinal cortex
nTPM: 34.9
Samples: 4

Max nTPM: 38.7
Min nTPM: 32.4
Sample A Male 34.8
Sample B Male 38.7
Sample C Female 32.4
Sample D Female 33.8
31.832.433.831.032.705101520253035
 		Hippocampal formation
nTPM: 33.2
Samples: 4

Max nTPM: 37.0
Min nTPM: 31.0
Sample A Male 32.1
Sample B Male 31.0
Sample C Female 37.0
Sample D Female 32.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
69885720 Antisense, RP_050512_03_C10, Mouse strain C57BL/6J (56 days, male) 3.8

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