BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:34.7 nTPM
HPA Brain:37.0 nTPM
GTEx:34.7 nTPM
FANTOM5:73.7 Scaled Tags Per Million
Pig:26.5 nTPM
Mouse:53.6 nTPM
Allen mouse:8.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells020406080100120140nCPM

CAUDATE - Antibody stainingi
Antibody CAB037205
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 37.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.1
2481 Female, age 94, left hemisphere 46.7
1781 Male, age 74, unknown 36.8
2289 Male, age 61, right hemisphere 33.5
1854 Male, age 80, left hemisphere 31.2
1857 Female, age 85, left hemisphere 29.9
2290 Female, age 72, unknown 28.6
2846 Female, age 79, unknown 28.2
2288 Male, age 75, left hemisphere 21.7
Globus pallidus, externus
nTPM: 37.0
1996 Male, age 80, right hemisphere 45.2
2646 Male, age 61, right hemisphere 41.7
2772 Female, age 79, unknown 37.2
2395 Male, age 75, both hemispheres 31.3
2567 Female, age 72, unknown 29.5
Globus pallidus, internus
nTPM: 33.2
2037 Male, age 80, right hemisphere 40.9
2483 Female, age 94, right hemisphere 37.1
2287 Male, age 75, right hemisphere 34.3
1818 Male, age 74, unknown 31.8
2111 Female, age 85, right hemisphere 31.7
2778 Female, age 91, both hemispheres 29.7
2566 Female, age 72, unknown 26.8
Nucleus accumbens
nTPM: 27.0
1806 Female, age 85, left hemisphere 31.7
2391 Female, age 94, left hemisphere 30.6
2732 Male, age 80, right hemisphere 30.4
1783 Male, age 74, unknown 26.7
2286 Male, age 75, left hemisphere 26.6
2698 Female, age 72, unknown 24.6
2824 Male, age 61, right hemisphere 23.8
1856 Female, age 91, right hemisphere 22.0
Nucleus basalis of Meynert
nTPM: 29.6
2569 Male, age 61, both hemispheres 42.0
2484 Female, age 94, left hemisphere 28.7
2393 Male, age 80, right hemisphere 25.5
2821 Male, age 75, both hemispheres 22.0
Nucleus of the diagonal band
nTPM: 31.2
2775 Male, age 80, right hemisphere 35.6
1812 Female, age 91, both hemispheres 31.7
2195 Female, age 85, both hemispheres 31.7
2029 Male, age 61, right hemisphere 29.4
1979 Male, age 74, unknown 27.8
Putamen
nTPM: 27.4
2482 Female, age 94, left hemisphere 35.5
2647 Male, age 75, left hemisphere 29.7
2489 Female, age 72, unknown 28.5
2466 Female, age 79, unknown 27.9
1829 Male, age 74, unknown 25.4
1937 Female, age 91, right hemisphere 23.4
1838 Male, age 80, right hemisphere 21.2
Septal nuclei
nTPM: 35.7
2031 Female, age 72, unknown 45.3
1960 Male, age 74, unknown 40.3
2059 Female, age 85, both hemispheres 36.3
2629 Female, age 94, right hemisphere 33.7
2394 Male, age 61, left hemisphere 33.1
2199 Male, age 80, right hemisphere 32.4
2009 Female, age 91, both hemispheres 28.6
Stria terminalis, bed nucleus
nTPM: 29.2
2486 Female, age 94, both hemispheres 34.0
1974 Female, age 91, both hemispheres 30.8
2201 Male, age 74, unknown 22.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 34.7
GTEx sample id Sample description nTPM
25.532.841.08.463.401020304050607080
Brain - Caudate (basal ganglia)
Average nTPM: 34.7
Samples: 300

Max nTPM: 86.9
Min nTPM: 8.4
Std nTPM: 12.4
Median nTPM: 32.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 86.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 79.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 78.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 72.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 71.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 69.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 66.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 64.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 64.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 63.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 62.2
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23.328.736.612.155.301020304050607080
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.0
Samples: 285

Max nTPM: 87.2
Min nTPM: 12.1
Std nTPM: 13.0
Median nTPM: 28.7
GTEX-1N2EF-0011-R6a-SM-F33ZJ 60-69 years, male 87.2
GTEX-1NV5F-0011-R6a-SM-G8LKG 60-69 years, female 81.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 77.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 77.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 75.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 74.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 71.6
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 68.1
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 65.9
GTEX-14BIL-0011-R6b-SM-GPRXF 50-59 years, male 65.6
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 64.4
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24.330.339.99.462.0010203040506070
Brain - Putamen (basal ganglia)
Average nTPM: 33.4
Samples: 254

Max nTPM: 76.5
Min nTPM: 9.4
Std nTPM: 12.7
Median nTPM: 30.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 76.5
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 75.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 70.5
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 70.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 69.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 68.9
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 68.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 67.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 66.0
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 65.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 62.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 73.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 73.7
FF:10164-103B2 76 years, female 73.7
Nucleus accumbens
Scaled Tags Per Million: 59.7
FF:10037-101F1 23-56 years, mixed 59.7
Putamen
Scaled Tags Per Million: 68.7
FF:10176-103C5 60 years, female 68.7
Globus pallidus
Scaled Tags Per Million: 71.6
FF:10175-103C4 60 years, female 86.3
FF:10161-103A8 76 years, female 56.8

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 26.5
Pig sample Sample description nTPM
25.527.328.323.028.70246810121416182022242628
 		Caudate
nTPM: 26.6
Samples: 4

Max nTPM: 28.7
Min nTPM: 23.0
Sample A Female 23.0
Sample B Female 28.7
Sample C Male 28.1
Sample D Male 26.4
23.924.826.822.930.9024681012141618202224262830
 		Putamen
nTPM: 25.9
Samples: 4

Max nTPM: 30.9
Min nTPM: 22.9
Sample A Female 22.9
Sample B Female 24.2
Sample C Male 30.9
Sample D Male 25.4
20.121.421.821.322.50246810121416182022
 		Septum
nTPM: 20.5
Samples: 4

Max nTPM: 22.5
Min nTPM: 16.6
Sample A Female 22.5
Sample B Female 21.3
Sample C Male 16.6
Sample D Male 21.5
21.923.424.720.326.202468101214161820222426
 		Ventral pallidum
nTPM: 23.3
Samples: 4

Max nTPM: 26.2
Min nTPM: 20.3
Sample A Female 24.2
Sample B Female 26.2
Sample C Male 20.3
Sample D Male 22.5

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 53.6
Mouse sample Sample description nTPM
48.955.059.742.662.0051015202530354045505560
 		Caudate putamen
nTPM: 53.6
Samples: 4

Max nTPM: 62.0
Min nTPM: 42.6
Sample A Male 58.9
Sample B Male 62.0
Sample C Female 42.6
Sample D Female 51.0
21.422.924.420.425.8024681012141618202224
 		Septum
nTPM: 23.0
Samples: 4

Max nTPM: 25.8
Min nTPM: 20.4
Sample A Male 24.0
Sample B Male 25.8
Sample C Female 21.7
Sample D Female 20.4
38.539.641.037.442.60510152025303540
 		Ventral forebrain
nTPM: 39.8
Samples: 4

Max nTPM: 42.6
Min nTPM: 37.4
Sample A Male 38.9
Sample B Male 40.4
Sample C Female 37.4
Sample D Female 42.6

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 8.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.2
69885720 Antisense, RP_050512_03_C10, Mouse strain C57BL/6J (56 days, male) 8.2
Pallidum
Expression energy: 3.1
69885720 Antisense, RP_050512_03_C10, Mouse strain C57BL/6J (56 days, male) 3.1

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