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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
1028.0
nTPM
FANTOM5:
28.0
Scaled Tags Per Million
Pig:
9.1
nTPM
Allen mouse:
1.5
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1028.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 901.6
1984
Male, age 76, both hemispheres
1434.6
2301
Female, age 85, both hemispheres
936.3
2188
Female, age 91, both hemispheres
788.2
2090
Male, age 80, both hemispheres
447.2
Dorsal cochlear nucleus nTPM: 704.0
2378
Male, age 80, both hemispheres
1165.9
2370
Male, age 61, both hemispheres
953.4
2187
Female, age 91, both hemispheres
617.8
2058
Male, age 76, both hemispheres
429.3
2802
Male, age 74, right hemisphere
353.6
Dorsal tegmental nucleus nTPM: 732.3
2326
Male, age 74, both hemispheres
934.1
2358
Male, age 61, both hemispheres
725.0
1936
Male, age 76, left hemisphere
692.5
2083
Male, age 80, both hemispheres
577.5
Dorsolateral tegmental area nTPM: 754.5
2360
Male, age 74, both hemispheres
1908.7
2337
Male, age 61, both hemispheres
634.2
2751
Female, age 85, both hemispheres
568.2
2654
Male, age 80, both hemispheres
364.0
2141
Male, age 76, both hemispheres
297.3
Kolliker-Fuse nucleus nTPM: 529.6
2793
Female, age 91, left hemisphere
644.4
2315
Male, age 76, right hemisphere
502.0
2163
Male, age 80, both hemispheres
442.3
Lateral lemniscal nuclei nTPM: 712.7
2036
Male, age 80, both hemispheres
940.1
2169
Male, age 76, both hemispheres
761.6
2453
Male, age 74, right hemisphere
755.5
2746
Female, age 85, left hemisphere
557.1
2320
Female, age 91, left hemisphere
549.2
Lateral parabrachial nucleus nTPM: 498.5
2792
Male, age 76, both hemispheres
762.6
2013
Male, age 80, both hemispheres
467.2
2139
Female, age 85, right hemisphere
453.6
2790
Male, age 61, both hemispheres
310.7
Lateral vestibular nucleus nTPM: 846.9
2184
Male, age 76, both hemispheres
963.5
2311
Male, age 80, both hemispheres
730.3
Locus coeruleus nTPM: 670.3
2317
Female, age 72, unknown
1110.5
2162
Male, age 80, both hemispheres
769.0
1980
Male, age 76, both hemispheres
757.7
2788
Male, age 74, unknown
755.2
2014
Male, age 55, unknown
526.7
2123
Female, age 91, both hemispheres
442.6
2720
Male, age 74, both hemispheres
330.4
Medial parabrachial nucleus nTPM: 522.7
2170
Female, age 91, both hemispheres
655.4
2156
Male, age 61, both hemispheres
567.6
2786
Male, age 76, both hemispheres
526.1
2463
Female, age 85, right hemisphere
433.8
2854
Male, age 80, both hemispheres
430.3
Medial periolivary nuclei nTPM: 626.9
2171
Female, age 85, both hemispheres
920.2
2458
Female, age 91, both hemispheres
711.1
2063
Male, age 76, both hemispheres
516.7
2081
Male, age 80, both hemispheres
499.9
2791
Male, age 74, right hemisphere
486.7
Motor facial nucleus nTPM: 625.4
2365
Male, age 74, right hemisphere
993.3
2697
Female, age 85, both hemispheres
676.5
2126
Male, age 61, both hemispheres
599.8
2062
Male, age 76, both hemispheres
548.1
2327
Male, age 80, both hemispheres
547.0
2795
Female, age 91, both hemispheres
387.6
Motor trigeminal nucleus nTPM: 595.9
2560
Male, age 74, both hemispheres
661.5
2335
Male, age 61, both hemispheres
614.7
2321
Female, age 91, both hemispheres
592.8
2309
Male, age 76, both hemispheres
573.5
2079
Male, age 80, both hemispheres
537.0
Nuclei of the trapezoid body nTPM: 864.5
1983
Male, age 76, both hemispheres
1040.2
2159
Male, age 61, both hemispheres
912.4
2368
Female, age 91, both hemispheres
902.9
2735
Female, age 85, both hemispheres
889.8
2166
Male, age 80, both hemispheres
577.0
Nucleus raphe magnus nTPM: 865.9
2455
Male, age 74, both hemispheres
1357.8
2160
Male, age 61, both hemispheres
990.4
2459
Female, age 91, both hemispheres
959.4
2172
Female, age 85, both hemispheres
896.2
2328
Male, age 80, both hemispheres
558.5
2051
Male, age 76, both hemispheres
433.2
Paramedian reticular nucleus nTPM: 475.4
2313
Male, age 61, both hemispheres
609.5
2057
Male, age 80, both hemispheres
497.2
2052
Male, age 76, both hemispheres
479.6
2050
Female, age 85, both hemispheres
315.3
Pedunculopontine tegmental nucleus nTPM: 696.9
2338
Male, age 61, both hemispheres
809.4
2334
Male, age 80, both hemispheres
659.1
1921
Female, age 85, both hemispheres
622.3
Pontine nuclei nTPM: 756.8
2454
Male, age 74, left hemisphere
1466.2
2727
Male, age 61, right hemisphere
944.6
1968
Male, age 76, left hemisphere
828.5
2319
Female, age 91, both hemispheres
785.2
2115
Male, age 80, left hemisphere
538.4
1863
Male, age 55, unknown
537.4
2787
Female, age 85, both hemispheres
522.9
2109
Female, age 72, unknown
430.9
Pontine raphe nucleus nTPM: 589.3
2122
Female, age 85, midline
603.9
2853
Male, age 76, midline
574.7
Posteroventral cochlear nucleus nTPM: 465.2
2371
Male, age 61, both hemispheres
734.3
2752
Female, age 85, both hemispheres
491.0
2341
Male, age 80, both hemispheres
462.4
2135
Female, age 91, both hemispheres
450.0
2070
Male, age 76, both hemispheres
188.1
Principal sensory trigeminal nucleus nTPM: 817.7
2367
Female, age 91, left hemisphere
1213.7
2158
Male, age 61, both hemispheres
725.6
2008
Male, age 80, left hemisphere
666.5
2324
Male, age 76, both hemispheres
665.0
Reticular pontine nucleus, caudal nTPM: 689.7
2457
Female, age 91, both hemispheres
875.6
2559
Male, age 74, both hemispheres
701.3
2332
Male, age 80, right hemisphere
659.9
2092
Male, age 76, both hemispheres
522.0
Reticular pontine nucleus, oral nTPM: 883.5
2361
Male, age 74, both hemispheres
1555.0
2366
Female, age 91, both hemispheres
1016.2
2167
Male, age 76, both hemispheres
766.7
2012
Female, age 85, both hemispheres
555.1
1939
Male, age 80, both hemispheres
524.5
Reticulotegmental nucleus nTPM: 781.8
2452
Male, age 74, both hemispheres
1057.3
2325
Male, age 76, both hemispheres
822.4
2333
Male, age 80, both hemispheres
674.1
2322
Female, age 91, both hemispheres
573.4
Spinal trigeminal nucleus, oral nTPM: 1028.0
1978
Male, age 76, both hemispheres
1694.8
2737
Female, age 85, both hemispheres
703.5
2164
Male, age 80, both hemispheres
685.5
Subcoeruleus area nTPM: 636.1
2451
Male, age 74, both hemispheres
1077.7
2323
Female, age 91, left hemisphere
660.4
2089
Male, age 76, left hemisphere
531.8
1958
Male, age 80, both hemispheres
499.8
2369
Female, age 85, left hemisphere
410.9
Superior olive nTPM: 931.4
2364
Male, age 74, right hemisphere
2059.3
1875
Female, age 85, both hemispheres
745.8
2329
Male, age 80, right hemisphere
695.0
2020
Male, age 76, both hemispheres
624.4
2561
Female, age 91, both hemispheres
532.5
Ventral periolivary nuclei nTPM: 434.3
2165
Male, age 80, both hemispheres
812.1
2794
Female, age 91, left hemisphere
431.6
2130
Female, age 85, both hemispheres
281.3
2023
Male, age 76, both hemispheres
212.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 840.2
2449
Male, age 74, both hemispheres
1142.0
2359
Male, age 61, both hemispheres
1018.8
2161
Male, age 80, both hemispheres
928.7
2456
Female, age 91, both hemispheres
810.8
2840
Female, age 85, both hemispheres
587.8
1959
Male, age 76, both hemispheres
553.3
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.1
Pig sample
Sample description
nTPM
Pons nTPM: 9.2
Samples: 4
Max nTPM: 10.6
Min nTPM: 7.6
Sample A
Female
10.2
Sample B
Female
7.6
Sample C
Male
8.2
Sample D
Male
10.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
