MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.3 nTPM
HPA Brain:874.0 nTPM
GTEx:16.3 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:9.8 nTPM
Mouse:30.9 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 874.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 653.0
2219 Male, age 76, both hemispheres 1363.1
2411 Female, age 72, unknown 1051.1
2019 Male, age 18, unknown 841.9
2828 Female, age 72, unknown 674.9
1827 Male, age 72, unknown 651.8
1870 Female, age 42, unknown 617.1
1833 Male, age 53, unknown 466.5
1830 Male, age 51, unknown 455.3
2666 Male, age 74, left hemisphere 227.8
2586 Male, age 75, left hemisphere 180.9
Dorsal raphe nucleus
nTPM: 750.5
2298 Female, age 72, unknown 1079.7
2750 Male, age 76, both hemispheres 967.2
2016 Female, age 72, unknown 677.6
1828 Male, age 53, unknown 533.4
2047 Male, age 72, unknown 494.4
Inferior colliculus
nTPM: 874.0
1890 Male, age 53, unknown 1095.0
2097 Female, age 72, unknown 912.6
1848 Female, age 42, unknown 850.9
2849 Male, age 72, unknown 637.3
Median raphe nucleus
nTPM: 462.5
2220 Male, age 76, midline 462.5
Periaquaductal grey, anterior
nTPM: 772.1
2502 Female, age 75, unknown 1230.7
1795 Male, age 51, unknown 570.5
1947 Male, age 18, unknown 515.2
Periaquaductal grey, dorsal
nTPM: 764.7
2850 Male, age 76, both hemispheres 907.1
2464 Female, age 72, unknown 857.3
1840 Male, age 53, unknown 812.9
1831 Male, age 72, unknown 481.3
Periaquaductal grey, lateral
nTPM: 687.4
2272 Male, age 74, both hemispheres 1165.5
2140 Male, age 76, both hemispheres 527.4
2053 Male, age 18, unknown 369.3
Pretectal area
nTPM: 619.6
2273 Male, age 74, both hemispheres 1259.0
2224 Female, age 72, unknown 889.1
2667 Female, age 75, unknown 719.8
2007 Male, age 72, unknown 656.9
1815 Male, age 53, unknown 628.0
1816 Male, age 51, unknown 609.2
1944 Female, age 72, unknown 571.5
2407 Male, age 75, both hemispheres 424.0
2825 Male, age 18, unknown 412.8
1817 Female, age 42, unknown 404.2
2316 Male, age 76, right hemisphere 241.5
Red nucleus
nTPM: 575.4
2503 Female, age 72, unknown 897.5
2769 Male, age 72, unknown 850.8
2227 Male, age 72, unknown 849.2
1865 Male, age 51, unknown 782.7
1904 Male, age 53, unknown 644.9
1954 Female, age 42, unknown 640.1
2785 Male, age 18, unknown 561.0
1821 Female, age 72, unknown 412.3
2823 Male, age 76, right hemisphere 403.3
2588 Male, age 74, left hemisphere 347.9
2725 Female, age 75, unknown 298.2
2584 Male, age 75, left hemisphere 216.4
Substantia nigra
nTPM: 552.6
2409 Female, age 72, unknown 1011.3
1889 Female, age 72, unknown 733.0
1941 Male, age 53, unknown 707.2
2699 Male, age 18, unknown 569.6
1851 Male, age 51, unknown 544.2
2590 Female, age 75, unknown 514.6
1916 Female, age 42, unknown 477.9
2665 Male, age 74, both hemispheres 364.4
2241 Male, age 72, unknown 345.6
2583 Male, age 75, right hemisphere 258.1
Superior colliculus
nTPM: 610.5
2261 Male, age 18, unknown 986.2
1895 Male, age 76, right hemisphere 819.3
2087 Female, age 72, unknown 727.0
1913 Female, age 42, unknown 715.7
1995 Male, age 72, unknown 707.4
1796 Male, age 53, unknown 590.7
2587 Male, age 74, left hemisphere 504.9
2668 Female, age 75, unknown 450.9
1839 Male, age 51, unknown 418.5
2664 Male, age 75, both hemispheres 184.3
Ventral tegmental area
nTPM: 693.7
2410 Female, age 72, unknown 949.8
2218 Male, age 76, both hemispheres 842.6
1942 Male, age 51, unknown 805.3
2223 Female, age 72, unknown 625.2
1915 Female, age 42, unknown 552.1
2021 Male, age 53, unknown 387.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.3
Samples: 139

Max nTPM: 34.5
Min nTPM: 9.6
Std nTPM: 4.1
Median nTPM: 15.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 34.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 33.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 27.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 23.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 23.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 23.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 23.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 22.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 22.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 21.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.5
Samples: 4

Max nTPM: 11.9
Min nTPM: 7.9
Sample A Female 11.9
Sample B Female 7.9
Sample C Male 8.8
Sample D Male 9.4
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 12.7
Min nTPM: 6.7
Sample A Female 12.7
Sample B Female 9.2
Sample C Male 6.7
Sample D Male 8.9
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 8.8
Min nTPM: 5.9
Sample B Female 8.8
Sample C Male 7.5
Sample D Male 5.9
Superior colliculi
nTPM: 9.8
Samples: 4

Max nTPM: 10.9
Min nTPM: 8.4
Sample A Female 10.9
Sample B Female 10.0
Sample C Male 10.0
Sample D Male 8.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 32.0
Min nTPM: 29.6
Sample A Male 32.0
Sample B Male 31.2
Sample C Female 30.9
Sample D Female 29.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
68341943 Antisense, RP_041207_02_E02, Mouse strain C57BL/6J (56 days, male) 1.3

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