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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
72.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 50.4
2090
Male, age 80, both hemispheres
58.2
2301
Female, age 85, both hemispheres
55.8
2188
Female, age 91, both hemispheres
52.0
1984
Male, age 76, both hemispheres
35.8
Dorsal cochlear nucleus nTPM: 72.7
2802
Male, age 74, right hemisphere
103.0
2378
Male, age 80, both hemispheres
84.0
2058
Male, age 76, both hemispheres
59.0
2370
Male, age 61, both hemispheres
58.9
2187
Female, age 91, both hemispheres
58.8
Dorsal tegmental nucleus nTPM: 49.6
2083
Male, age 80, both hemispheres
65.0
2326
Male, age 74, both hemispheres
59.2
1936
Male, age 76, left hemisphere
40.7
2358
Male, age 61, both hemispheres
33.3
Dorsolateral tegmental area nTPM: 51.3
2654
Male, age 80, both hemispheres
71.9
2751
Female, age 85, both hemispheres
62.2
2141
Male, age 76, both hemispheres
42.9
2337
Male, age 61, both hemispheres
42.9
2360
Male, age 74, both hemispheres
36.5
Kolliker-Fuse nucleus nTPM: 56.5
2315
Male, age 76, right hemisphere
62.1
2163
Male, age 80, both hemispheres
54.2
2793
Female, age 91, left hemisphere
53.1
Lateral lemniscal nuclei nTPM: 44.4
2320
Female, age 91, left hemisphere
61.3
2453
Male, age 74, right hemisphere
56.3
2746
Female, age 85, left hemisphere
39.2
2169
Male, age 76, both hemispheres
36.4
2036
Male, age 80, both hemispheres
29.0
Lateral parabrachial nucleus nTPM: 42.4
2792
Male, age 76, both hemispheres
45.6
2013
Male, age 80, both hemispheres
44.1
2790
Male, age 61, both hemispheres
40.5
2139
Female, age 85, right hemisphere
39.3
Lateral vestibular nucleus nTPM: 53.6
2184
Male, age 76, both hemispheres
58.2
2311
Male, age 80, both hemispheres
49.0
Locus coeruleus nTPM: 37.8
2123
Female, age 91, both hemispheres
47.0
2317
Female, age 72, unknown
44.5
2162
Male, age 80, both hemispheres
43.3
2720
Male, age 74, both hemispheres
39.4
1980
Male, age 76, both hemispheres
35.4
2014
Male, age 55, unknown
32.8
2788
Male, age 74, unknown
21.7
Medial parabrachial nucleus nTPM: 53.3
2170
Female, age 91, both hemispheres
62.7
2463
Female, age 85, right hemisphere
56.9
2156
Male, age 61, both hemispheres
51.4
2854
Male, age 80, both hemispheres
48.4
2786
Male, age 76, both hemispheres
47.0
Medial periolivary nuclei nTPM: 42.1
2081
Male, age 80, both hemispheres
48.4
2458
Female, age 91, both hemispheres
47.0
2171
Female, age 85, both hemispheres
44.9
2063
Male, age 76, both hemispheres
35.5
2791
Male, age 74, right hemisphere
34.5
Motor facial nucleus nTPM: 52.4
2795
Female, age 91, both hemispheres
83.3
2126
Male, age 61, both hemispheres
62.7
2327
Male, age 80, both hemispheres
60.2
2697
Female, age 85, both hemispheres
40.2
2365
Male, age 74, right hemisphere
35.1
2062
Male, age 76, both hemispheres
33.1
Motor trigeminal nucleus nTPM: 58.1
2560
Male, age 74, both hemispheres
73.7
2335
Male, age 61, both hemispheres
66.8
2321
Female, age 91, both hemispheres
57.4
2079
Male, age 80, both hemispheres
51.6
2309
Male, age 76, both hemispheres
40.8
Nuclei of the trapezoid body nTPM: 45.9
2159
Male, age 61, both hemispheres
53.8
2166
Male, age 80, both hemispheres
50.0
2368
Female, age 91, both hemispheres
49.8
2735
Female, age 85, both hemispheres
42.0
1983
Male, age 76, both hemispheres
33.9
Nucleus raphe magnus nTPM: 45.1
2328
Male, age 80, both hemispheres
55.8
2459
Female, age 91, both hemispheres
51.6
2455
Male, age 74, both hemispheres
48.1
2172
Female, age 85, both hemispheres
42.1
2160
Male, age 61, both hemispheres
39.3
2051
Male, age 76, both hemispheres
33.4
Paramedian reticular nucleus nTPM: 48.3
2313
Male, age 61, both hemispheres
53.5
2050
Female, age 85, both hemispheres
51.5
2057
Male, age 80, both hemispheres
51.2
2052
Male, age 76, both hemispheres
37.1
Pedunculopontine tegmental nucleus nTPM: 42.2
2334
Male, age 80, both hemispheres
50.5
1921
Female, age 85, both hemispheres
44.4
2338
Male, age 61, both hemispheres
31.8
Pontine nuclei nTPM: 49.8
2454
Male, age 74, left hemisphere
67.0
2787
Female, age 85, both hemispheres
57.6
2319
Female, age 91, both hemispheres
57.5
2109
Female, age 72, unknown
51.4
1863
Male, age 55, unknown
50.7
2115
Male, age 80, left hemisphere
45.8
2727
Male, age 61, right hemisphere
34.5
1968
Male, age 76, left hemisphere
34.4
Pontine raphe nucleus nTPM: 43.4
2122
Female, age 85, midline
44.2
2853
Male, age 76, midline
42.6
Posteroventral cochlear nucleus nTPM: 49.8
2371
Male, age 61, both hemispheres
63.0
2135
Female, age 91, both hemispheres
55.8
2341
Male, age 80, both hemispheres
52.2
2070
Male, age 76, both hemispheres
43.5
2752
Female, age 85, both hemispheres
34.3
Principal sensory trigeminal nucleus nTPM: 44.4
2367
Female, age 91, left hemisphere
49.8
2324
Male, age 76, both hemispheres
49.1
2008
Male, age 80, left hemisphere
43.4
2158
Male, age 61, both hemispheres
35.4
Reticular pontine nucleus, caudal nTPM: 52.1
2559
Male, age 74, both hemispheres
68.8
2332
Male, age 80, right hemisphere
57.9
2457
Female, age 91, both hemispheres
48.4
2092
Male, age 76, both hemispheres
33.4
Reticular pontine nucleus, oral nTPM: 49.4
2366
Female, age 91, both hemispheres
54.0
1939
Male, age 80, both hemispheres
53.3
2167
Male, age 76, both hemispheres
51.7
2012
Female, age 85, both hemispheres
50.1
2361
Male, age 74, both hemispheres
37.9
Reticulotegmental nucleus nTPM: 69.9
2452
Male, age 74, both hemispheres
79.0
2333
Male, age 80, both hemispheres
76.1
2322
Female, age 91, both hemispheres
67.4
2325
Male, age 76, both hemispheres
57.2
Spinal trigeminal nucleus, oral nTPM: 47.3
2164
Male, age 80, both hemispheres
67.0
1978
Male, age 76, both hemispheres
37.8
2737
Female, age 85, both hemispheres
37.2
Subcoeruleus area nTPM: 51.5
2369
Female, age 85, left hemisphere
68.4
2451
Male, age 74, both hemispheres
55.3
2323
Female, age 91, left hemisphere
53.0
1958
Male, age 80, both hemispheres
43.3
2089
Male, age 76, left hemisphere
37.7
Superior olive nTPM: 47.0
2561
Female, age 91, both hemispheres
60.3
2329
Male, age 80, right hemisphere
60.2
1875
Female, age 85, both hemispheres
38.5
2020
Male, age 76, both hemispheres
38.1
2364
Male, age 74, right hemisphere
37.9
Ventral periolivary nuclei nTPM: 48.8
2794
Female, age 91, left hemisphere
57.0
2165
Male, age 80, both hemispheres
51.1
2130
Female, age 85, both hemispheres
46.6
2023
Male, age 76, both hemispheres
40.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 49.1
2456
Female, age 91, both hemispheres
67.5
2161
Male, age 80, both hemispheres
58.6
2840
Female, age 85, both hemispheres
51.0
2449
Male, age 74, both hemispheres
46.9
2359
Male, age 61, both hemispheres
40.6
1959
Male, age 76, both hemispheres
29.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
114.4
Pig sample
Sample description
nTPM
Pons nTPM: 114.4
Samples: 4
Max nTPM: 123.5
Min nTPM: 106.8
Sample A
Female
120.3
Sample B
Female
106.8
Sample C
Male
106.9
Sample D
Male
123.5
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
