MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.7 nTPM
HPA Brain:60.7 nTPM
GTEx:32.7 nTPM
FANTOM5:156.7 Scaled Tags Per Million
Pig:123.9 nTPM
Mouse:54.5 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.5
2019 Male, age 18, unknown 59.2
2666 Male, age 74, left hemisphere 58.9
1870 Female, age 42, unknown 53.9
2828 Female, age 72, unknown 53.5
1833 Male, age 53, unknown 50.2
1830 Male, age 51, unknown 46.4
2411 Female, age 72, unknown 45.8
1827 Male, age 72, unknown 35.4
2219 Male, age 76, both hemispheres 33.2
2586 Male, age 75, left hemisphere 29.0
Dorsal raphe nucleus
nTPM: 45.4
1828 Male, age 53, unknown 48.7
2750 Male, age 76, both hemispheres 48.0
2016 Female, age 72, unknown 47.9
2047 Male, age 72, unknown 45.7
2298 Female, age 72, unknown 36.5
Inferior colliculus
nTPM: 49.5
2097 Female, age 72, unknown 55.8
1890 Male, age 53, unknown 52.2
1848 Female, age 42, unknown 45.9
2849 Male, age 72, unknown 44.2
Median raphe nucleus
nTPM: 60.0
2220 Male, age 76, midline 60.0
Periaquaductal grey, anterior
nTPM: 46.7
2502 Female, age 75, unknown 59.7
1947 Male, age 18, unknown 44.3
1795 Male, age 51, unknown 36.2
Periaquaductal grey, dorsal
nTPM: 35.9
2850 Male, age 76, both hemispheres 44.8
2464 Female, age 72, unknown 37.9
1831 Male, age 72, unknown 33.1
1840 Male, age 53, unknown 27.8
Periaquaductal grey, lateral
nTPM: 41.4
2140 Male, age 76, both hemispheres 51.8
2053 Male, age 18, unknown 36.6
2272 Male, age 74, both hemispheres 35.9
Pretectal area
nTPM: 39.8
1817 Female, age 42, unknown 57.0
2007 Male, age 72, unknown 53.9
2316 Male, age 76, right hemisphere 51.8
1815 Male, age 53, unknown 40.3
2224 Female, age 72, unknown 38.4
1816 Male, age 51, unknown 38.2
2667 Female, age 75, unknown 37.5
1944 Female, age 72, unknown 36.5
2825 Male, age 18, unknown 32.1
2273 Male, age 74, both hemispheres 28.5
2407 Male, age 75, both hemispheres 23.2
Red nucleus
nTPM: 60.7
2227 Male, age 72, unknown 72.9
1954 Female, age 42, unknown 70.6
2769 Male, age 72, unknown 70.3
1904 Male, age 53, unknown 69.6
1821 Female, age 72, unknown 69.1
2503 Female, age 72, unknown 64.3
1865 Male, age 51, unknown 62.5
2785 Male, age 18, unknown 62.1
2588 Male, age 74, left hemisphere 54.4
2725 Female, age 75, unknown 47.3
2823 Male, age 76, right hemisphere 47.3
2584 Male, age 75, left hemisphere 38.5
Substantia nigra
nTPM: 43.2
2665 Male, age 74, both hemispheres 82.8
1889 Female, age 72, unknown 48.1
1916 Female, age 42, unknown 47.1
1851 Male, age 51, unknown 45.1
2699 Male, age 18, unknown 44.4
2590 Female, age 75, unknown 37.7
2409 Female, age 72, unknown 37.0
1941 Male, age 53, unknown 32.1
2583 Male, age 75, right hemisphere 31.4
2241 Male, age 72, unknown 26.3
Superior colliculus
nTPM: 37.4
2587 Male, age 74, left hemisphere 49.2
1913 Female, age 42, unknown 42.5
1995 Male, age 72, unknown 42.4
1839 Male, age 51, unknown 41.0
2087 Female, age 72, unknown 40.0
2668 Female, age 75, unknown 39.3
1796 Male, age 53, unknown 36.3
2261 Male, age 18, unknown 34.2
1895 Male, age 76, right hemisphere 31.0
2664 Male, age 75, both hemispheres 18.1
Ventral tegmental area
nTPM: 42.0
2223 Female, age 72, unknown 51.5
2021 Male, age 53, unknown 43.9
2218 Male, age 76, both hemispheres 40.5
1942 Male, age 51, unknown 40.2
2410 Female, age 72, unknown 39.8
1915 Female, age 42, unknown 36.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.7
Samples: 139

Max nTPM: 189.3
Min nTPM: 8.1
Std nTPM: 22.3
Median nTPM: 28.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 189.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 153.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 86.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 73.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 69.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 67.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 65.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 64.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 62.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 61.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 61.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 156.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 156.7
FF:10158-103A5 76 years, female 156.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 123.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 123.9
Samples: 4

Max nTPM: 136.9
Min nTPM: 118.8
Sample A Female 120.4
Sample B Female 119.6
Sample C Male 118.8
Sample D Male 136.9
Midbrain
nTPM: 115.3
Samples: 4

Max nTPM: 124.2
Min nTPM: 106.5
Sample A Female 123.3
Sample B Female 106.5
Sample C Male 124.2
Sample D Male 107.0
Periaqueductal gray
nTPM: 90.4
Samples: 3

Max nTPM: 97.4
Min nTPM: 77.1
Sample B Female 96.6
Sample C Male 97.4
Sample D Male 77.1
Superior colliculi
nTPM: 122.6
Samples: 4

Max nTPM: 137.0
Min nTPM: 89.2
Sample A Female 132.1
Sample B Female 89.2
Sample C Male 131.9
Sample D Male 137.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 67.0
Min nTPM: 46.0
Sample A Male 46.0
Sample B Male 46.0
Sample C Female 67.0
Sample D Female 58.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
69873875 Antisense, RP_050512_02_B12, Mouse strain C57BL/6J (56 days, male) 3.4
74882936 Antisense, RP_060315_04_H08, Mouse strain C57BL/6J (56 days, male) 2.5

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