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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
32.7
nTPM
HPA Brain:
60.7
nTPM
GTEx:
32.7
nTPM
FANTOM5:
156.7
Scaled Tags Per Million
Pig:
123.9
nTPM
Mouse:
54.5
nTPM
Allen mouse:
2.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 46.5
2019
Male, age 18, unknown
59.2
2666
Male, age 74, left hemisphere
58.9
1870
Female, age 42, unknown
53.9
2828
Female, age 72, unknown
53.5
1833
Male, age 53, unknown
50.2
1830
Male, age 51, unknown
46.4
2411
Female, age 72, unknown
45.8
1827
Male, age 72, unknown
35.4
2219
Male, age 76, both hemispheres
33.2
2586
Male, age 75, left hemisphere
29.0
Dorsal raphe nucleus nTPM: 45.4
1828
Male, age 53, unknown
48.7
2750
Male, age 76, both hemispheres
48.0
2016
Female, age 72, unknown
47.9
2047
Male, age 72, unknown
45.7
2298
Female, age 72, unknown
36.5
Inferior colliculus nTPM: 49.5
2097
Female, age 72, unknown
55.8
1890
Male, age 53, unknown
52.2
1848
Female, age 42, unknown
45.9
2849
Male, age 72, unknown
44.2
Median raphe nucleus nTPM: 60.0
2220
Male, age 76, midline
60.0
Periaquaductal grey, anterior nTPM: 46.7
2502
Female, age 75, unknown
59.7
1947
Male, age 18, unknown
44.3
1795
Male, age 51, unknown
36.2
Periaquaductal grey, dorsal nTPM: 35.9
2850
Male, age 76, both hemispheres
44.8
2464
Female, age 72, unknown
37.9
1831
Male, age 72, unknown
33.1
1840
Male, age 53, unknown
27.8
Periaquaductal grey, lateral nTPM: 41.4
2140
Male, age 76, both hemispheres
51.8
2053
Male, age 18, unknown
36.6
2272
Male, age 74, both hemispheres
35.9
Pretectal area nTPM: 39.8
1817
Female, age 42, unknown
57.0
2007
Male, age 72, unknown
53.9
2316
Male, age 76, right hemisphere
51.8
1815
Male, age 53, unknown
40.3
2224
Female, age 72, unknown
38.4
1816
Male, age 51, unknown
38.2
2667
Female, age 75, unknown
37.5
1944
Female, age 72, unknown
36.5
2825
Male, age 18, unknown
32.1
2273
Male, age 74, both hemispheres
28.5
2407
Male, age 75, both hemispheres
23.2
Red nucleus nTPM: 60.7
2227
Male, age 72, unknown
72.9
1954
Female, age 42, unknown
70.6
2769
Male, age 72, unknown
70.3
1904
Male, age 53, unknown
69.6
1821
Female, age 72, unknown
69.1
2503
Female, age 72, unknown
64.3
1865
Male, age 51, unknown
62.5
2785
Male, age 18, unknown
62.1
2588
Male, age 74, left hemisphere
54.4
2725
Female, age 75, unknown
47.3
2823
Male, age 76, right hemisphere
47.3
2584
Male, age 75, left hemisphere
38.5
Substantia nigra nTPM: 43.2
2665
Male, age 74, both hemispheres
82.8
1889
Female, age 72, unknown
48.1
1916
Female, age 42, unknown
47.1
1851
Male, age 51, unknown
45.1
2699
Male, age 18, unknown
44.4
2590
Female, age 75, unknown
37.7
2409
Female, age 72, unknown
37.0
1941
Male, age 53, unknown
32.1
2583
Male, age 75, right hemisphere
31.4
2241
Male, age 72, unknown
26.3
Superior colliculus nTPM: 37.4
2587
Male, age 74, left hemisphere
49.2
1913
Female, age 42, unknown
42.5
1995
Male, age 72, unknown
42.4
1839
Male, age 51, unknown
41.0
2087
Female, age 72, unknown
40.0
2668
Female, age 75, unknown
39.3
1796
Male, age 53, unknown
36.3
2261
Male, age 18, unknown
34.2
1895
Male, age 76, right hemisphere
31.0
2664
Male, age 75, both hemispheres
18.1
Ventral tegmental area nTPM: 42.0
2223
Female, age 72, unknown
51.5
2021
Male, age 53, unknown
43.9
2218
Male, age 76, both hemispheres
40.5
1942
Male, age 51, unknown
40.2
2410
Female, age 72, unknown
39.8
1915
Female, age 42, unknown
36.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 32.7
Samples: 139
Max nTPM: 189.3
Min nTPM: 8.1
Std nTPM: 22.3
Median nTPM: 28.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
189.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
153.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
86.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
73.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
69.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
67.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
65.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
64.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
62.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
61.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
61.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
57.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
56.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
50.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
50.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
50.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
50.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
49.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
48.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
46.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
46.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
45.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
45.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
45.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
45.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
44.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
44.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
44.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
43.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
43.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
43.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
42.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
41.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
38.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
38.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
38.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
37.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
35.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
35.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
35.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
34.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
34.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
33.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
33.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
33.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
33.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
32.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
32.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
31.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
31.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
31.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
31.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
31.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
30.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
30.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
30.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
30.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
29.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
29.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
29.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
29.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
29.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
29.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
28.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
28.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
28.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
28.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
28.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
28.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
28.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
28.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
28.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
27.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
27.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
27.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
27.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
27.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
26.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
26.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
26.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
25.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
25.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
25.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
25.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
25.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
25.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
24.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
24.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
24.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
24.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
24.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
23.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
23.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
22.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
22.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
22.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
22.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
21.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
21.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
21.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
21.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
21.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
21.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
20.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
20.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
20.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
20.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
20.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
19.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
19.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
19.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
18.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
18.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
18.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
18.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
18.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
17.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
17.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
17.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
17.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
16.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
16.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
15.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
15.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
15.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
14.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
14.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
13.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
13.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
12.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
11.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
11.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
10.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
10.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
10.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
10.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
8.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
8.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
8.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 54.5
Samples: 4
Max nTPM: 67.0
Min nTPM: 46.0
Sample A
Male
46.0
Sample B
Male
46.0
Sample C
Female
67.0
Sample D
Female
58.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.