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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
50.1
Sample id
Sample description
nTPM
Amygdala nTPM: 44.0
2695
Female, age 67, right hemisphere
70.4
2814
Male, age 76, right hemisphere
54.7
2514
Male, age 75, right hemisphere
34.3
2517
Female, age 94, left hemisphere
33.2
1987
Female, age 91, left hemisphere
27.4
Basal amygdala nTPM: 34.8
2827
Female, age 67, right hemisphere
59.0
2609
Male, age 75, right hemisphere
40.9
1955
Male, age 76, both hemispheres
33.7
2685
Female, age 94, left hemisphere
27.2
2110
Male, age 80, left hemisphere
26.8
2243
Female, age 91, right hemisphere
21.4
Central amygdala nTPM: 43.3
2826
Female, age 94, left hemisphere
67.1
1905
Male, age 76, both hemispheres
47.1
2515
Male, age 75, right hemisphere
42.6
2239
Male, age 80, left hemisphere
34.2
2701
Female, age 91, right hemisphere
25.6
Corticomedial amygdala nTPM: 30.1
2428
Male, age 75, right hemisphere
41.8
2535
Female, age 67, right hemisphere
40.2
2829
Male, age 80, left hemisphere
28.4
2429
Female, age 94, left hemisphere
27.9
2242
Female, age 91, right hemisphere
22.3
2240
Male, age 76, both hemispheres
20.0
Lateral amygdala nTPM: 50.1
2830
Female, age 67, right hemisphere
95.8
2516
Male, age 75, right hemisphere
53.9
2534
Female, age 94, left hemisphere
53.0
1883
Male, age 76, both hemispheres
43.3
2256
Male, age 80, left hemisphere
28.0
2255
Female, age 91, right hemisphere
26.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 23.5
Samples: 152
Max nTPM: 141.8
Min nTPM: 5.0
Std nTPM: 18.0
Median nTPM: 18.8
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
141.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
99.4
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
94.7
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
79.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
74.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
59.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
53.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
50.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
49.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
49.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
48.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
48.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
46.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
45.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
39.4
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
38.5
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
37.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
37.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
37.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
36.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
36.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
35.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
35.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
33.6
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
32.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
32.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
32.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
31.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
31.2
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
30.5
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
30.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
29.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
29.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
29.2
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
29.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
28.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
28.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
27.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
26.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
26.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
26.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
26.6
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
26.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
26.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
25.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
25.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
25.0
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
24.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
24.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
24.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
23.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
23.7
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
23.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
23.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
23.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
23.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
23.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
23.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
23.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
22.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
22.1
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
22.1
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
22.1
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
21.9
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
21.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
21.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
20.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
20.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
20.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
19.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
19.5
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
19.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
19.4
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
19.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
19.2
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
19.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
18.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
18.3
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
18.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
18.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
17.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
17.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
17.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
17.2
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
17.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
17.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
17.0
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
16.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
16.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
16.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
16.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
16.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
16.5
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
16.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
16.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
16.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
16.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
16.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
16.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
15.7
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
15.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
15.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
15.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
14.9
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
14.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
14.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
14.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
14.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
14.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
14.2
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
14.1
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
14.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
13.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
13.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
13.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
12.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
12.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
12.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
12.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
12.0
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
11.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
11.7
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
11.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
11.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
11.2
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
11.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
10.9
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
10.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
10.8
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
10.7
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
10.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
10.5
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
10.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
10.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
9.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
9.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
9.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
8.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
8.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
8.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
8.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
8.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
8.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
7.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
7.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
7.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
6.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
6.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
6.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
6.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
5.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
5.0
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 52.7
Samples: 4
Max nTPM: 74.3
Min nTPM: 39.6
Sample A
Male
39.6
Sample B
Male
40.3
Sample C
Female
74.3
Sample D
Female
56.7
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
