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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
28.2
nTPM
HPA Brain:
42.1
nTPM
GTEx:
28.2
nTPM
FANTOM5:
102.9
Scaled Tags Per Million
Pig:
88.8
nTPM
Mouse:
47.8
nTPM
Allen mouse:
2.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
42.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 41.0
2529
Female, age 94, left hemisphere
48.5
2621
Female, age 67, right hemisphere
45.3
1855
Male, age 76, left hemisphere
44.4
1911
Female, age 85, right hemisphere
38.9
1898
Male, age 80, left hemisphere
34.5
2148
Female, age 91, left hemisphere
34.4
Dentate gyrus nTPM: 42.1
2010
Male, age 76, both hemispheres
69.6
2530
Female, age 94, left hemisphere
62.0
2531
Female, age 67, both hemispheres
37.8
2528
Male, age 74, both hemispheres
31.7
2246
Female, age 85, both hemispheres
27.2
1927
Female, age 91, both hemispheres
24.4
Entorhinal gyrus nTPM: 29.0
1787
Male, age 76, left hemisphere
36.3
2117
Female, age 91, right hemisphere
34.5
2686
Male, age 75, right hemisphere
30.6
2613
Female, age 94, left hemisphere
24.7
2764
Male, age 80, right hemisphere
24.7
1938
Female, age 85, left hemisphere
23.2
Hippocampus, CA1 nTPM: 37.5
2045
Male, age 76, both hemispheres
51.7
2527
Male, age 74, both hemispheres
46.1
1873
Female, age 85, both hemispheres
33.8
2749
Male, age 80, left hemisphere
30.4
2082
Female, age 91, right hemisphere
25.3
Hippocampus, CA2 nTPM: 37.4
2249
Male, age 74, both hemispheres
50.0
2437
Female, age 94, left hemisphere
48.4
1963
Male, age 80, left hemisphere
42.7
2113
Female, age 91, right hemisphere
29.7
1892
Male, age 76, both hemispheres
28.9
1940
Female, age 85, left hemisphere
24.9
Hippocampus, CA3 nTPM: 40.9
2861
Female, age 67, both hemispheres
58.3
1867
Male, age 76, both hemispheres
47.1
2436
Male, age 74, both hemispheres
44.4
2620
Female, age 94, left hemisphere
35.0
1891
Female, age 85, both hemispheres
33.3
2137
Male, age 80, left hemisphere
27.4
Parahippocampal cortex nTPM: 34.5
2018
Male, age 76, both hemispheres
80.6
2245
Female, age 91, both hemispheres
36.1
2622
Female, age 67, right hemisphere
35.1
2532
Female, age 72, left hemisphere
31.5
1933
Female, age 85, both hemispheres
29.4
1990
Female, age 91, right hemisphere
28.4
2250
Female, age 67, right hemisphere
27.5
2692
Male, age 74, both hemispheres
27.0
2693
Female, age 94, both hemispheres
25.8
1850
Male, age 80, both hemispheres
23.4
Perirhinal gyrus nTPM: 24.8
1841
Female, age 85, right hemisphere
28.9
1794
Male, age 80, right hemisphere
27.9
2521
Female, age 94, right hemisphere
25.0
1847
Female, age 91, left hemisphere
24.1
2848
Male, age 76, right hemisphere
18.2
Subiculum nTPM: 36.5
2042
Male, age 76, both hemispheres
61.8
2619
Male, age 74, both hemispheres
44.1
1977
Female, age 85, both hemispheres
29.5
1901
Male, age 80, both hemispheres
28.8
2438
Female, age 94, left hemisphere
28.8
2729
Female, age 91, right hemisphere
25.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 28.2
Samples: 197
Max nTPM: 107.6
Min nTPM: 4.8
Std nTPM: 18.0
Median nTPM: 23.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
107.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
101.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
98.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
96.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
78.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
76.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
72.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
71.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
64.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
64.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
64.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
58.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
57.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
57.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
54.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
54.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
52.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
52.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
51.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
49.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
48.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
48.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
47.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
47.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
46.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
46.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
45.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
44.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
44.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
43.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
43.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
43.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
42.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
41.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
41.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
41.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
41.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
39.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
39.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
39.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
38.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
38.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
38.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
37.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
37.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
37.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
36.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
36.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
35.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
34.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
33.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
33.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
33.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
32.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
32.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
32.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
32.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
32.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
31.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
31.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
31.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
31.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
30.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
30.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
30.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
30.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
30.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
30.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
30.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
30.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
29.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
29.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
29.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
29.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
28.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
28.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
28.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
28.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
28.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
28.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
28.0
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
27.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
27.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
27.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
27.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
26.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
26.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
25.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
25.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
25.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
25.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
25.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
24.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
24.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
24.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
24.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
24.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
24.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
23.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
23.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
23.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
23.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
23.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
23.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
23.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
22.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
22.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
22.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
22.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
22.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
21.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
21.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
21.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
21.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
21.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
20.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
20.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
20.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
20.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
20.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
19.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
19.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
19.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
19.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
19.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
19.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
18.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
18.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
18.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
18.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
18.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
18.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
17.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
17.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
17.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
17.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
17.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
17.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
17.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
17.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
17.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
16.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
16.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
16.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
16.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
16.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
16.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
16.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
16.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
16.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
16.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
15.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
15.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
15.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
15.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
14.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
14.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
14.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
13.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
13.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
13.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
13.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
13.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
13.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
12.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
12.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
12.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
11.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
11.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
11.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
11.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
11.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
11.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
11.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
11.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
11.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
10.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
10.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
10.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
10.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
10.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
10.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
10.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
9.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
9.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
9.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
9.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
8.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
8.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
8.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
8.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
8.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
6.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
6.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
6.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
6.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
4.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 47.8
Samples: 4
Max nTPM: 55.9
Min nTPM: 40.2
Sample A
Male
41.3
Sample B
Male
40.2
Sample C
Female
53.6
Sample D
Female
55.9
Hippocampal formation nTPM: 42.3
Samples: 4
Max nTPM: 52.6
Min nTPM: 33.1
Sample A
Male
33.4
Sample B
Male
33.1
Sample C
Female
50.1
Sample D
Female
52.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.