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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MDK is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
239.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2859.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2144.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1569.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1391.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1371.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1281.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1171.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1076.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1065.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1035.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1033.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1024.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
999.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
954.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
938.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
929.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
849.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
836.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
834.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
822.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
813.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
767.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
762.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
731.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
713.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
672.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
671.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
667.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
639.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
625.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
606.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
601.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
593.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
591.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
582.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
578.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
574.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
574.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
562.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
558.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
555.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
551.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
546.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
539.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
534.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
522.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
515.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
511.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
499.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
491.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
483.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
468.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
467.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
461.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
456.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
456.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
453.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
449.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
443.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
441.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
441.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
440.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
439.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
438.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
437.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
432.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
426.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
413.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
408.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
403.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
402.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
402.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
394.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
388.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
377.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
375.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
371.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
369.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
365.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
363.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
354.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
353.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
352.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
347.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
345.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
343.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
336.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
333.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
329.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
324.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
321.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
321.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
320.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
316.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
305.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
300.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
296.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
284.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
279.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
279.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
277.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
268.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
267.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
263.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
260.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
258.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
258.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
256.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
249.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
246.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
241.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
240.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
234.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
233.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
233.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
233.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
230.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
226.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
221.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
219.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
219.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
217.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
215.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
214.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
210.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
206.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
205.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
203.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
202.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
201.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
200.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
197.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
197.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
193.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
191.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
190.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
187.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
187.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
183.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
179.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
178.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
178.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
178.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
178.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
177.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
177.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
176.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
173.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
170.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
169.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
168.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
166.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
166.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
166.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
164.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
162.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
160.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
160.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
159.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
152.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
151.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
149.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
148.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
148.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
148.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
148.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
147.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
146.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
146.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
143.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
142.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
141.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
140.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
138.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
134.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
133.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
132.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
131.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
131.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
130.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
130.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
129.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
129.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
128.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
128.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
126.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
124.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
124.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
122.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
120.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
120.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
120.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
119.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
117.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
116.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
116.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
116.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
115.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
115.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
114.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
113.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
112.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
112.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
111.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
111.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
108.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
107.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
103.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
103.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
103.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
103.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
101.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
100.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
99.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
98.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
97.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
94.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
93.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
92.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
92.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
92.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
92.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
91.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
90.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
89.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
87.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
84.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
84.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
84.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
84.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
82.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
82.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
82.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
80.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
80.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
79.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
77.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
76.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
75.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
73.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
72.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
71.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
68.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
65.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
65.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
65.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
64.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
63.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
63.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
62.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
61.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
60.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
60.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
59.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
57.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
56.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
56.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
55.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
55.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
53.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
51.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
50.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
50.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
50.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
49.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
48.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
48.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
47.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
46.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
45.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
45.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
44.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
44.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
42.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
42.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
41.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
38.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
37.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
36.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
35.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
35.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
34.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
34.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
30.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
29.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MDK is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
173.8
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
1024.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
929.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
923.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
912.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
844.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
768.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
694.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
679.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
678.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
676.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
645.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
629.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
593.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
589.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
569.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
569.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
565.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
538.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
521.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
518.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
500.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
447.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
444.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
421.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
397.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
379.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
376.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
376.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
363.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
359.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
333.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
331.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
329.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
325.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
314.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
306.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
298.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
294.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
293.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
288.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
287.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
287.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
285.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
278.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
275.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
271.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
271.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
269.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
259.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
257.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
257.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
256.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
252.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
252.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
246.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
244.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
242.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
238.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
236.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
226.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
221.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
216.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
214.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
211.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
210.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
206.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
205.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
200.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
194.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
190.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
190.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
189.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
189.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
187.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
187.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
183.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
182.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
181.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
180.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
179.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
176.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
174.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
167.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
165.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
160.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
159.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
157.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
157.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
157.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
155.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
152.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
151.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
150.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
146.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
141.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
141.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
137.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
133.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
133.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
133.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
131.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
127.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
125.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
122.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
122.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
122.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
121.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
119.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
118.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
118.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
117.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
115.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
113.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
113.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
112.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
111.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
111.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
110.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
110.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
109.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
107.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
100.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
97.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
94.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
93.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
92.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
90.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
85.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
83.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
79.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
78.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
77.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
76.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
74.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
73.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
73.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
71.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
70.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
69.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
68.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
66.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
65.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
65.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
62.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
60.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
60.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
60.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
59.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
59.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
58.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
57.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
54.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
54.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
52.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
52.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
52.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
52.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
51.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
51.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
51.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
50.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
50.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
47.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
46.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
46.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
45.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
44.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
44.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
43.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
40.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
40.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
40.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
39.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
38.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
38.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
38.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
37.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
36.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
34.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
33.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
26.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
3.5
755
Tumor
2.8
477
Tumor
2.6
861
Tumor
2.5
727
Tumor
2.3
661
Tumor
2.2
351
Tumor
2.1
343
Tumor
2.1
471
Tumor
2.0
363
Tumor
1.9
385
Tumor
1.9
443
Tumor
1.8
1025
Tumor
1.7
951
Tumor
1.6
817
Tumor
1.6
535
Tumor
1.6
517
Tumor
1.5
915
Tumor
1.5
921
Tumor
1.5
525
Tumor
1.4
983
Tumor
1.4
877
Tumor
1.4
1021
Tumor
1.3
451
Tumor
1.3
883
Tumor
1.2
1015
Tumor
1.2
463
Tumor
1.2
425
Tumor
1.2
823
Tumor
1.2
387
Tumor
1.1
635
Tumor
1.1
171
Tumor
1.1
923
Tumor
1.1
553
Tumor
1.0
393
Tumor
1.0
135
Tumor
1.0
223
Tumor
1.0
743
Tumor
0.9
557
Tumor
0.9
311
Tumor
0.8
967
Tumor
0.8
395
Tumor
0.8
937
Tumor
0.8
713
Tumor
0.8
957
Tumor
0.8
981
Tumor
0.8
955
Tumor
0.7
977
Tumor
0.7
331
Tumor
0.7
367
Tumor
0.7
1041
Tumor
0.7
413
Tumor
0.6
195
Tumor
0.6
285
Tumor
0.6
537
Tumor
0.6
724
Normal
0.6
671
Tumor
0.6
715
Tumor
0.6
433
Tumor
0.6
975
Tumor
0.5
493
Tumor
0.5
227
Tumor
0.5
455
Tumor
0.4
185
Tumor
0.4
161
Tumor
0.4
943
Tumor
0.4
217
Tumor
0.4
127
Tumor
0.4
745
Tumor
0.3
187
Tumor
0.3
881
Tumor
0.3
113
Tumor
0.3
391
Tumor
0.2
355
Tumor
0.2
865
Tumor
0.2
966
Normal
0.2
647
Tumor
0.2
473
Tumor
0.1
123
Tumor
0.1
851
Tumor
0.1
452
Normal
0.1
283
Tumor
0.1
375
Tumor
0.1
221
Tumor
0.0
341
Tumor
-0.1
124
Normal
-0.1
815
Tumor
-0.1
257
Tumor
-0.1
492
Normal
-0.1
483
Tumor
-0.1
434
Normal
-0.1
917
Tumor
-0.2
213
Tumor
-0.2
474
Normal
-0.2
545
Tumor
-0.2
685
Tumor
-0.2
697
Tumor
-0.2
421
Tumor
-0.2
313
Tumor
-0.3
1043
Tumor
-0.3
716
Normal
-0.3
487
Tumor
-0.4
364
Normal
-0.4
141
Tumor
-0.4
478
Normal
-0.4
538
Normal
-0.4
131
Tumor
-0.4
435
Tumor
-0.4
137
Tumor
-0.5
523
Tumor
-0.5
386
Normal
-0.5
662
Normal
-0.5
554
Normal
-0.5
231
Tumor
-0.5
112
Tumor
-0.5
491
Tumor
-0.5
394
Normal
-0.5
412
Normal
-0.5
448
Normal
-0.5
352
Normal
-0.5
873
Tumor
-0.6
744
Normal
-0.6
862
Normal
-0.6
964
Normal
-0.6
357
Tumor
-0.7
963
Tumor
-0.7
695
Tumor
-0.7
756
Normal
-0.7
297
Tumor
-0.7
467
Tumor
-0.7
342
Normal
-0.7
142
Normal
-0.7
728
Normal
-0.7
271
Tumor
-0.7
447
Tumor
-0.8
388
Normal
-0.8
536
Normal
-0.8
918
Normal
-0.8
813
Tumor
-0.8
456
Normal
-0.8
968
Normal
-0.8
914
Normal
-0.9
925
Tumor
-0.9
1031
Tumor
-0.9
672
Normal
-0.9
878
Normal
-0.9
125
Tumor
-0.9
1013
Tumor
-0.9
976
Normal
-0.9
573
Tumor
-0.9
958
Normal
-0.9
814
Normal
-0.9
396
Normal
-0.9
524
Normal
-0.9
916
Normal
-0.9
298
Normal
-1.0
922
Normal
-1.0
816
Normal
-1.0
924
Normal
-1.0
214
Normal
-1.0
494
Normal
-1.0
114
Normal
-1.0
111
Normal
-1.0
466
Normal
-1.0
1026
Normal
-1.0
186
Normal
-1.0
172
Normal
-1.1
648
Normal
-1.1
426
Normal
-1.1
383
Tumor
-1.1
742
Normal
-1.1
464
Normal
-1.1
344
Normal
-1.1
468
Normal
-1.1
737
Tumor
-1.1
1022
Normal
-1.1
497
Tumor
-1.2
867
Tumor
-1.2
327
Tumor
-1.2
218
Normal
-1.2
431
Tumor
-1.2
261
Tumor
-1.2
358
Normal
-1.2
277
Tumor
-1.2
852
Normal
-1.2
956
Normal
-1.2
162
Normal
-1.2
741
Tumor
-1.2
444
Normal
-1.3
436
Normal
-1.3
778
Normal
-1.3
392
Normal
-1.3
516
Normal
-1.3
361
Tumor
-1.3
498
Normal
-1.3
353
Tumor
-1.3
926
Normal
-1.4
278
Normal
-1.4
664
Normal
-1.4
138
Normal
-1.4
312
Normal
-1.4
354
Normal
-1.4
665
Tumor
-1.4
982
Normal
-1.4
913
Tumor
-1.4
422
Normal
-1.4
666
Normal
-1.4
866
Normal
-1.4
192
Normal
-1.4
874
Normal
-1.4
211
Tumor
-1.4
262
Normal
-1.4
136
Normal
-1.4
574
Normal
-1.5
721
Tumor
-1.5
445
Tumor
-1.5
465
Tumor
-1.5
738
Normal
-1.5
188
Normal
-1.5
368
Normal
-1.5
362
Normal
-1.5
663
Tumor
-1.5
472
Normal
-1.5
366
Normal
-1.5
563
Tumor
-1.5
515
Tumor
-1.5
424
Normal
-1.5
376
Normal
-1.5
1016
Normal
-1.6
365
Tumor
-1.6
857
Tumor
-1.6
228
Normal
-1.6
415
Tumor
-1.6
267
Tumor
-1.6
461
Tumor
-1.6
686
Normal
-1.6
824
Normal
-1.6
714
Normal
-1.6
232
Normal
-1.6
952
Normal
-1.6
332
Normal
-1.6
484
Normal
-1.6
911
Tumor
-1.6
863
Tumor
-1.7
272
Normal
-1.7
126
Normal
-1.7
567
Tumor
-1.7
572
Normal
-1.7
414
Normal
-1.7
427
Tumor
-1.7
698
Normal
-1.7
128
Normal
-1.7
564
Normal
-1.7
428
Normal
-1.7
746
Normal
-1.7
284
Normal
-1.7
1045
Tumor
-1.8
432
Normal
-1.8
314
Normal
-1.8
446
Normal
-1.8
884
Normal
-1.8
944
Normal
-1.8
212
Normal
-1.8
518
Normal
-1.8
938
Normal
-1.8
568
Normal
-1.8
534
Normal
-1.9
196
Normal
-1.9
328
Normal
-1.9
882
Normal
-1.9
1028
Normal
-1.9
527
Tumor
-1.9
462
Normal
-1.9
482
Normal
-2.0
148
Normal
-2.0
723
Tumor
-2.0
356
Normal
-2.0
423
Tumor
-2.0
147
Tumor
-2.0
132
Normal
-2.1
978
Normal
-2.1
864
Normal
-2.1
984
Normal
-2.1
868
Normal
-2.1
533
Tumor
-2.2
268
Normal
-2.2
1014
Normal
-2.2
777
Tumor
-2.2
384
Normal
-2.2
416
Normal
-2.2
818
Normal
-2.2
146
Normal
-2.2
546
Normal
-2.2
858
Normal
-2.2
145
Tumor
-2.2
636
Normal
-2.2
222
Normal
-2.2
722
Normal
-2.2
481
Tumor
-2.2
558
Normal
-2.2
191
Tumor
-2.3
785
Tumor
-2.3
286
Normal
-2.3
411
Tumor
-2.3
488
Normal
-2.3
224
Normal
-2.4
696
Normal
-2.4
1042
Normal
-2.4
642
Normal
-2.5
1032
Normal
-2.5
615
Tumor
-2.5
617
Tumor
-2.6
528
Normal
-2.7
258
Normal
-2.7
912
Normal
-2.8
953
Tumor
-2.8
628
Normal
-2.8
786
Normal
-2.8
1044
Normal
-2.9
618
Normal
-2.9
641
Tumor
-2.9
954
Normal
-2.9
571
Tumor
-3.0
1046
Normal
-3.0
526
Normal
-3.0
513
Tumor
-3.2
1027
Tumor
-3.4
616
Normal
-3.6
514
Normal
-3.9
627
Tumor
-4.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.