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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
58.8
nTPM
HPA Brain:
129.0
nTPM
GTEx:
58.8
nTPM
FANTOM5:
134.7
Scaled Tags Per Million
Pig:
39.5
nTPM
Mouse:
33.5
nTPM
Allen mouse:
1.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
129.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 118.7
2666
Male, age 74, left hemisphere
202.5
2586
Male, age 75, left hemisphere
164.3
2019
Male, age 18, unknown
154.2
2828
Female, age 72, unknown
108.8
1833
Male, age 53, unknown
100.8
2411
Female, age 72, unknown
96.8
1830
Male, age 51, unknown
96.2
2219
Male, age 76, both hemispheres
95.1
1870
Female, age 42, unknown
87.1
1827
Male, age 72, unknown
81.0
Dorsal raphe nucleus nTPM: 98.8
2047
Male, age 72, unknown
116.8
1828
Male, age 53, unknown
114.2
2750
Male, age 76, both hemispheres
94.8
2298
Female, age 72, unknown
87.5
2016
Female, age 72, unknown
80.8
Inferior colliculus nTPM: 89.4
1890
Male, age 53, unknown
92.8
2097
Female, age 72, unknown
92.2
1848
Female, age 42, unknown
87.3
2849
Male, age 72, unknown
85.2
Median raphe nucleus nTPM: 129.0
2220
Male, age 76, midline
129.0
Periaquaductal grey, anterior nTPM: 99.1
1947
Male, age 18, unknown
102.1
1795
Male, age 51, unknown
99.7
2502
Female, age 75, unknown
95.5
Periaquaductal grey, dorsal nTPM: 85.9
2850
Male, age 76, both hemispheres
101.1
2464
Female, age 72, unknown
87.0
1840
Male, age 53, unknown
81.2
1831
Male, age 72, unknown
74.2
Periaquaductal grey, lateral nTPM: 81.2
2140
Male, age 76, both hemispheres
110.1
2053
Male, age 18, unknown
70.7
2272
Male, age 74, both hemispheres
62.8
Pretectal area nTPM: 99.8
2007
Male, age 72, unknown
153.6
1817
Female, age 42, unknown
151.3
1815
Male, age 53, unknown
115.8
1944
Female, age 72, unknown
105.2
1816
Male, age 51, unknown
103.8
2316
Male, age 76, right hemisphere
88.5
2667
Female, age 75, unknown
82.8
2224
Female, age 72, unknown
78.9
2407
Male, age 75, both hemispheres
77.9
2825
Male, age 18, unknown
76.8
2273
Male, age 74, both hemispheres
63.4
Red nucleus nTPM: 114.6
2588
Male, age 74, left hemisphere
173.7
2785
Male, age 18, unknown
151.3
1954
Female, age 42, unknown
121.2
2584
Male, age 75, left hemisphere
120.8
1904
Male, age 53, unknown
115.8
2227
Male, age 72, unknown
115.3
1821
Female, age 72, unknown
113.9
2769
Male, age 72, unknown
113.9
1865
Male, age 51, unknown
103.4
2503
Female, age 72, unknown
90.1
2725
Female, age 75, unknown
87.4
2823
Male, age 76, right hemisphere
68.2
Substantia nigra nTPM: 119.1
2665
Male, age 74, both hemispheres
169.5
1916
Female, age 42, unknown
145.9
1851
Male, age 51, unknown
129.8
2583
Male, age 75, right hemisphere
129.0
1889
Female, age 72, unknown
122.1
1941
Male, age 53, unknown
110.3
2241
Male, age 72, unknown
110.3
2699
Male, age 18, unknown
96.0
2409
Female, age 72, unknown
89.0
2590
Female, age 75, unknown
88.8
Superior colliculus nTPM: 97.0
2668
Female, age 75, unknown
186.5
2087
Female, age 72, unknown
109.4
2664
Male, age 75, both hemispheres
106.4
2587
Male, age 74, left hemisphere
100.6
1839
Male, age 51, unknown
92.8
2261
Male, age 18, unknown
82.4
1995
Male, age 72, unknown
81.9
1796
Male, age 53, unknown
79.7
1913
Female, age 42, unknown
71.1
1895
Male, age 76, right hemisphere
58.9
Ventral tegmental area nTPM: 104.5
1942
Male, age 51, unknown
109.7
2218
Male, age 76, both hemispheres
106.4
2223
Female, age 72, unknown
106.3
1915
Female, age 42, unknown
104.0
2410
Female, age 72, unknown
101.0
2021
Male, age 53, unknown
99.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 58.8
Samples: 139
Max nTPM: 173.0
Min nTPM: 17.1
Std nTPM: 28.9
Median nTPM: 51.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
173.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
168.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
167.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
153.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
132.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
128.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
119.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
112.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
111.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
111.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
109.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
109.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
99.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
97.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
94.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
94.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
93.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
87.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
82.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
82.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
77.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
77.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
76.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
76.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
72.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
71.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
71.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
70.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
70.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
69.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
69.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
68.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
68.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
68.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
68.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
67.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
66.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
66.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
66.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
65.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
64.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
63.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
63.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
62.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
61.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
61.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
61.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
60.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
60.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
60.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
59.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
56.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
56.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
55.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
55.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
55.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
55.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
55.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
55.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
54.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
54.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
54.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
53.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
53.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
53.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
53.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
53.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
52.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
52.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
51.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
51.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
51.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
51.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
50.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
50.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
50.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
49.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
49.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
49.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
48.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
48.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
48.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
46.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
46.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
46.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
45.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
45.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
45.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
45.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
45.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
45.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
44.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
44.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
44.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
44.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
43.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
43.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
43.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
43.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
43.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
42.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
42.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
42.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
41.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
41.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
41.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
40.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
40.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
40.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
38.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
38.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
37.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
36.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
36.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
35.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
34.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
34.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
34.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
33.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
33.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
33.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
33.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
33.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
32.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
32.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
32.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
30.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
30.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
29.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
29.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
28.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
28.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
28.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
28.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
26.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
25.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
24.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
21.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
17.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
33.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 33.5
Samples: 4
Max nTPM: 35.3
Min nTPM: 31.0
Sample A
Male
31.0
Sample B
Male
33.1
Sample C
Female
35.3
Sample D
Female
34.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.