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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
50.5
nTPM
HPA Brain:
108.5
nTPM
GTEx:
50.5
nTPM
FANTOM5:
73.2
Scaled Tags Per Million
Pig:
33.1
nTPM
Mouse:
40.8
nTPM
Allen mouse:
2.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA052673
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
108.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 93.9
1855
Male, age 76, left hemisphere
128.7
2529
Female, age 94, left hemisphere
95.1
1898
Male, age 80, left hemisphere
92.1
1911
Female, age 85, right hemisphere
88.1
2621
Female, age 67, right hemisphere
81.0
2148
Female, age 91, left hemisphere
78.4
Dentate gyrus nTPM: 94.5
2010
Male, age 76, both hemispheres
136.2
2530
Female, age 94, left hemisphere
116.9
2531
Female, age 67, both hemispheres
96.7
2246
Female, age 85, both hemispheres
77.1
2528
Male, age 74, both hemispheres
71.5
1927
Female, age 91, both hemispheres
68.4
Entorhinal gyrus nTPM: 81.7
2686
Male, age 75, right hemisphere
98.8
2764
Male, age 80, right hemisphere
87.1
1787
Male, age 76, left hemisphere
85.2
2613
Female, age 94, left hemisphere
81.6
1938
Female, age 85, left hemisphere
71.2
2117
Female, age 91, right hemisphere
66.6
Hippocampus, CA1 nTPM: 99.0
2045
Male, age 76, both hemispheres
140.6
2082
Female, age 91, right hemisphere
110.4
2749
Male, age 80, left hemisphere
93.7
2527
Male, age 74, both hemispheres
79.0
1873
Female, age 85, both hemispheres
71.4
Hippocampus, CA2 nTPM: 95.2
1892
Male, age 76, both hemispheres
116.2
2113
Female, age 91, right hemisphere
106.1
1963
Male, age 80, left hemisphere
96.5
2437
Female, age 94, left hemisphere
93.2
1940
Female, age 85, left hemisphere
83.1
2249
Male, age 74, both hemispheres
75.8
Hippocampus, CA3 nTPM: 108.5
2861
Female, age 67, both hemispheres
157.2
1867
Male, age 76, both hemispheres
138.3
2620
Female, age 94, left hemisphere
109.8
2137
Male, age 80, left hemisphere
101.9
1891
Female, age 85, both hemispheres
74.4
2436
Male, age 74, both hemispheres
69.5
Parahippocampal cortex nTPM: 83.8
2622
Female, age 67, right hemisphere
120.8
2018
Male, age 76, both hemispheres
106.1
2532
Female, age 72, left hemisphere
96.2
2692
Male, age 74, both hemispheres
82.7
2245
Female, age 91, both hemispheres
81.0
1933
Female, age 85, both hemispheres
77.5
1850
Male, age 80, both hemispheres
74.7
2693
Female, age 94, both hemispheres
70.3
1990
Female, age 91, right hemisphere
67.2
2250
Female, age 67, right hemisphere
61.6
Perirhinal gyrus nTPM: 77.3
1841
Female, age 85, right hemisphere
81.5
1794
Male, age 80, right hemisphere
81.0
2848
Male, age 76, right hemisphere
81.0
2521
Female, age 94, right hemisphere
72.5
1847
Female, age 91, left hemisphere
70.5
Subiculum nTPM: 86.0
2042
Male, age 76, both hemispheres
129.6
1901
Male, age 80, both hemispheres
86.2
2619
Male, age 74, both hemispheres
82.2
2438
Female, age 94, left hemisphere
78.6
1977
Female, age 85, both hemispheres
76.2
2729
Female, age 91, right hemisphere
63.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
50.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 50.5
Samples: 197
Max nTPM: 160.8
Min nTPM: 13.4
Std nTPM: 22.8
Median nTPM: 42.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
160.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
137.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
129.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
126.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
117.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
106.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
105.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
103.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
97.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
91.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
91.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
90.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
90.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
85.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
84.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
83.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
82.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
82.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
82.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
79.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
78.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
77.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
75.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
74.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
72.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
72.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
72.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
71.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
71.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
70.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
70.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
70.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
68.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
68.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
68.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
67.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
67.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
65.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
64.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
64.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
64.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
64.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
63.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
63.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
63.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
63.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
62.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
62.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
62.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
61.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
61.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
61.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
60.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
59.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
59.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
58.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
58.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
58.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
58.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
58.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
57.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
57.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
56.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
56.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
56.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
56.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
56.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
54.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
54.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
53.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
53.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
51.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
51.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
51.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
50.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
50.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
49.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
49.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
48.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
48.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
48.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
48.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
48.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
48.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
48.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
47.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
47.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
46.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
46.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
45.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
45.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
45.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
45.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
44.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
44.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
43.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
42.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
42.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
42.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
42.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
42.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
42.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
42.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
41.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
41.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
41.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
41.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
41.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
41.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
41.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
41.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
41.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
41.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
40.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
40.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
40.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
40.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
40.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
40.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
40.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
40.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
40.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
39.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
39.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
39.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
39.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
38.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
38.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
38.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
38.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
37.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
37.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
37.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
37.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
36.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
36.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
36.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
36.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
35.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
35.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
35.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
35.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
35.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
35.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
35.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
35.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
35.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
35.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
34.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
34.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
34.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
34.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
34.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
34.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
34.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
33.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
33.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
33.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
33.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
33.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
33.5
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
33.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
33.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
33.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
32.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
32.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
32.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
32.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
31.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
31.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
31.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
31.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
30.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
30.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
30.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
29.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
29.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
29.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
29.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
29.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
28.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
27.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
27.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
26.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
26.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
25.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
25.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
25.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
23.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
22.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
21.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
21.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
21.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
20.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
19.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
18.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
13.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 40.8
Samples: 4
Max nTPM: 44.5
Min nTPM: 37.8
Sample A
Male
40.4
Sample B
Male
37.8
Sample C
Female
40.4
Sample D
Female
44.5
Hippocampal formation nTPM: 36.2
Samples: 4
Max nTPM: 40.0
Min nTPM: 31.9
Sample A
Male
31.9
Sample B
Male
37.6
Sample C
Female
40.0
Sample D
Female
35.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.