HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:31.3 nTPM
GTEx:10.9 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:28.2 nTPM
Mouse:32.7 nTPM
Allen mouse:5.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells020406080100nCPM

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 31.3
Sample id Sample description nTPM
Hippocampus
nTPM: 30.9
2529 Female, age 94, left hemisphere 35.0
2621 Female, age 67, right hemisphere 33.0
2148 Female, age 91, left hemisphere 31.7
1898 Male, age 80, left hemisphere 29.5
1855 Male, age 76, left hemisphere 29.3
1911 Female, age 85, right hemisphere 27.2
Dentate gyrus
nTPM: 28.6
1927 Female, age 91, both hemispheres 29.7
2531 Female, age 67, both hemispheres 29.7
2010 Male, age 76, both hemispheres 29.4
2528 Male, age 74, both hemispheres 28.6
2246 Female, age 85, both hemispheres 27.6
2530 Female, age 94, left hemisphere 26.4
Entorhinal gyrus
nTPM: 31.3
1787 Male, age 76, left hemisphere 32.6
2117 Female, age 91, right hemisphere 31.7
1938 Female, age 85, left hemisphere 31.6
2613 Female, age 94, left hemisphere 31.6
2764 Male, age 80, right hemisphere 31.2
2686 Male, age 75, right hemisphere 29.3
Hippocampus, CA1
nTPM: 29.4
2749 Male, age 80, left hemisphere 33.2
1873 Female, age 85, both hemispheres 30.6
2527 Male, age 74, both hemispheres 29.9
2045 Male, age 76, both hemispheres 27.4
2082 Female, age 91, right hemisphere 26.2
Hippocampus, CA2
nTPM: 29.3
1963 Male, age 80, left hemisphere 33.0
1892 Male, age 76, both hemispheres 32.2
1940 Female, age 85, left hemisphere 28.8
2437 Female, age 94, left hemisphere 27.6
2113 Female, age 91, right hemisphere 27.3
2249 Male, age 74, both hemispheres 27.0
Hippocampus, CA3
nTPM: 30.3
2137 Male, age 80, left hemisphere 32.8
2861 Female, age 67, both hemispheres 31.5
2436 Male, age 74, both hemispheres 29.8
2620 Female, age 94, left hemisphere 29.5
1891 Female, age 85, both hemispheres 29.1
1867 Male, age 76, both hemispheres 28.9
Parahippocampal cortex
nTPM: 29.4
2245 Female, age 91, both hemispheres 33.0
1933 Female, age 85, both hemispheres 30.5
1990 Female, age 91, right hemisphere 29.9
1850 Male, age 80, both hemispheres 29.8
2622 Female, age 67, right hemisphere 29.6
2692 Male, age 74, both hemispheres 29.3
2250 Female, age 67, right hemisphere 28.4
2532 Female, age 72, left hemisphere 28.3
2693 Female, age 94, both hemispheres 28.1
2018 Male, age 76, both hemispheres 27.5
Perirhinal gyrus
nTPM: 31.2
1847 Female, age 91, left hemisphere 33.0
1841 Female, age 85, right hemisphere 32.1
1794 Male, age 80, right hemisphere 31.2
2848 Male, age 76, right hemisphere 30.2
2521 Female, age 94, right hemisphere 29.5
Subiculum
nTPM: 30.8
2438 Female, age 94, left hemisphere 38.2
1977 Female, age 85, both hemispheres 31.1
2619 Male, age 74, both hemispheres 30.8
1901 Male, age 80, both hemispheres 30.3
2729 Female, age 91, right hemisphere 29.3
2042 Male, age 76, both hemispheres 25.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 10.9
GTEx sample id Sample description nTPM
9.511.012.46.216.70246810121416
Brain - Hippocampus
Average nTPM: 10.9
Samples: 255

Max nTPM: 17.2
Min nTPM: 3.7
Std nTPM: 2.1
Median nTPM: 11.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 17.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 16.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 16.4
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 16.3
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 16.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 16.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 15.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 14.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 14.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 14.7
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 14.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.7
FF:10153-102I9 76 years, female 29.5
FF:10169-103B7 60 years, female 23.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 28.2
Pig sample Sample description nTPM
25.927.128.824.631.3024681012141618202224262830
 		Subiculum
nTPM: 27.6
Samples: 4

Max nTPM: 31.3
Min nTPM: 24.6
Sample A Female 31.3
Sample B Female 26.4
Sample C Male 27.9
Sample D Male 24.6
26.828.629.528.230.5024681012141618202224262830
 		Dorsal hippocampus
nTPM: 27.6
Samples: 4

Max nTPM: 30.5
Min nTPM: 22.6
Sample A Female 29.1
Sample B Female 28.2
Sample C Male 30.5
Sample D Male 22.6
25.425.927.024.629.50246810121416182022242628
 		Entorhinal cortex
nTPM: 26.5
Samples: 4

Max nTPM: 29.5
Min nTPM: 24.6
Sample A Female 29.5
Sample B Female 25.6
Sample C Male 26.2
Sample D Male 24.6
Ventral hippocampus
nTPM: 28.2
Samples: 4

Max nTPM: 32.6
Min nTPM: 23.6
Sample A Female 27.1
Sample B Female 23.6
Sample C Male 32.6
Sample D Male 29.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 32.7
Mouse sample Sample description nTPM
30.130.933.528.531.20510152025303540
 		Entorhinal cortex
nTPM: 32.7
Samples: 4

Max nTPM: 40.4
Min nTPM: 28.5
Sample A Male 31.2
Sample B Male 28.5
Sample C Female 30.6
Sample D Female 40.4
24.227.129.822.131.0024681012141618202224262830
 		Hippocampal formation
nTPM: 26.9
Samples: 4

Max nTPM: 31.0
Min nTPM: 22.1
Sample A Male 24.9
Sample B Male 31.0
Sample C Female 29.4
Sample D Female 22.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 5.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.7
71735072 Antisense, RP_050719_04_F12, Mouse strain C57BL/6J (56 days, male) 10.0
68844247 Antisense, RP_050222_01_B12, Mouse strain C57BL/6J (56 days, male) 7.5
71211471 Antisense, RP_050816_01_F07, Mouse strain C57BL/6J (56 days, male) 4.6
70920099 Antisense, RP_050713_02_F09, Mouse strain C57BL/6J (56 days, male) 0.9

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