BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.1 nTPM
HPA Brain:33.6 nTPM
GTEx:13.1 nTPM
FANTOM5:41.8 Scaled Tags Per Million
Pig:28.0 nTPM
Mouse:29.5 nTPM
Allen mouse:3.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells020406080100nCPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 33.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.1
2481 Female, age 94, left hemisphere 36.7
2288 Male, age 75, left hemisphere 35.2
1857 Female, age 85, left hemisphere 31.6
2289 Male, age 61, right hemisphere 31.2
2846 Female, age 79, unknown 31.1
1781 Male, age 74, unknown 30.8
1854 Male, age 80, left hemisphere 30.3
2290 Female, age 72, unknown 30.1
Globus pallidus, externus
nTPM: 32.5
1996 Male, age 80, right hemisphere 33.8
2395 Male, age 75, both hemispheres 33.3
2772 Female, age 79, unknown 33.3
2567 Female, age 72, unknown 31.7
2646 Male, age 61, right hemisphere 30.3
Globus pallidus, internus
nTPM: 33.6
2287 Male, age 75, right hemisphere 37.0
2778 Female, age 91, both hemispheres 34.1
1818 Male, age 74, unknown 33.3
2037 Male, age 80, right hemisphere 33.2
2566 Female, age 72, unknown 33.1
2483 Female, age 94, right hemisphere 32.9
2111 Female, age 85, right hemisphere 31.8
Nucleus accumbens
nTPM: 32.5
2391 Female, age 94, left hemisphere 36.6
2698 Female, age 72, unknown 33.6
1856 Female, age 91, right hemisphere 33.3
2286 Male, age 75, left hemisphere 33.2
2824 Male, age 61, right hemisphere 32.3
1783 Male, age 74, unknown 31.9
1806 Female, age 85, left hemisphere 29.7
2732 Male, age 80, right hemisphere 29.4
Nucleus basalis of Meynert
nTPM: 30.7
2569 Male, age 61, both hemispheres 32.9
2821 Male, age 75, both hemispheres 31.8
2484 Female, age 94, left hemisphere 30.0
2393 Male, age 80, right hemisphere 28.1
Nucleus of the diagonal band
nTPM: 30.9
2029 Male, age 61, right hemisphere 31.3
2775 Male, age 80, right hemisphere 31.3
1812 Female, age 91, both hemispheres 30.8
2195 Female, age 85, both hemispheres 30.7
1979 Male, age 74, unknown 30.4
Putamen
nTPM: 31.9
2482 Female, age 94, left hemisphere 35.2
1829 Male, age 74, unknown 32.9
1937 Female, age 91, right hemisphere 32.8
2647 Male, age 75, left hemisphere 32.3
2489 Female, age 72, unknown 31.0
2466 Female, age 79, unknown 30.0
1838 Male, age 80, right hemisphere 29.2
Septal nuclei
nTPM: 31.2
2629 Female, age 94, right hemisphere 36.6
1960 Male, age 74, unknown 33.5
2031 Female, age 72, unknown 31.7
2009 Female, age 91, both hemispheres 31.4
2199 Male, age 80, right hemisphere 30.0
2059 Female, age 85, both hemispheres 29.2
2394 Male, age 61, left hemisphere 26.2
Stria terminalis, bed nucleus
nTPM: 30.9
2201 Male, age 74, unknown 34.2
1974 Female, age 91, both hemispheres 32.3
2486 Female, age 94, both hemispheres 26.3

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 13.1
GTEx sample id Sample description nTPM
11.212.514.08.117.90246810121416182022
Brain - Caudate (basal ganglia)
Average nTPM: 12.6
Samples: 300

Max nTPM: 22.9
Min nTPM: 5.2
Std nTPM: 2.2
Median nTPM: 12.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 22.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 22.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 20.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 17.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 17.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 17.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 17.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 17.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 16.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 16.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 16.7
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11.012.513.98.017.202468101214161820
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.5
Samples: 285

Max nTPM: 20.0
Min nTPM: 2.8
Std nTPM: 2.0
Median nTPM: 12.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 20.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 18.9
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 17.2
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 17.1
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 16.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 16.6
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 16.6
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 16.5
GTEX-1PWST-0011-R6a-SM-F341Z 70-79 years, male 16.5
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 16.4
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 16.3
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11.613.014.57.518.7024681012141618202224
Brain - Putamen (basal ganglia)
Average nTPM: 13.1
Samples: 254

Max nTPM: 25.1
Min nTPM: 6.9
Std nTPM: 2.3
Median nTPM: 13.0
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 25.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 23.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 18.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 18.5
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 18.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 17.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 17.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 17.8
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 17.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 17.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 17.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.9
FF:10164-103B2 76 years, female 32.9
Nucleus accumbens
Scaled Tags Per Million: 41.8
FF:10037-101F1 23-56 years, mixed 41.8
Putamen
Scaled Tags Per Million: 33.3
FF:10176-103C5 60 years, female 33.3
Globus pallidus
Scaled Tags Per Million: 35.9
FF:10161-103A8 76 years, female 38.9
FF:10175-103C4 60 years, female 32.9

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 28.0
Pig sample Sample description nTPM
22.923.424.622.926.702468101214161820222426
 		Caudate
nTPM: 24.1
Samples: 4

Max nTPM: 26.7
Min nTPM: 22.9
Sample A Female 22.9
Sample B Female 23.9
Sample C Male 26.7
Sample D Male 22.9
25.527.528.621.829.70246810121416182022242628
 		Putamen
nTPM: 26.6
Samples: 4

Max nTPM: 29.7
Min nTPM: 21.8
Sample A Female 28.3
Sample B Female 21.8
Sample C Male 29.7
Sample D Male 26.7
Septum
nTPM: 28.0
Samples: 4

Max nTPM: 33.7
Min nTPM: 25.3
Sample A Female 27.2
Sample B Female 25.9
Sample C Male 33.7
Sample D Male 25.3
Ventral pallidum
nTPM: 27.8
Samples: 4

Max nTPM: 32.3
Min nTPM: 24.9
Sample A Female 24.9
Sample B Female 25.9
Sample C Male 32.3
Sample D Male 27.9

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 29.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 29.5
Samples: 4

Max nTPM: 32.3
Min nTPM: 26.2
Sample A Male 26.2
Sample B Male 29.9
Sample C Female 32.3
Sample D Female 29.7
26.229.032.323.636.305101520253035
 		Septum
nTPM: 29.5
Samples: 4

Max nTPM: 36.3
Min nTPM: 23.6
Sample A Male 30.9
Sample B Male 27.1
Sample C Female 23.6
Sample D Female 36.3
23.926.629.321.831.2024681012141618202224262830
 		Ventral forebrain
nTPM: 26.6
Samples: 4

Max nTPM: 31.2
Min nTPM: 21.8
Sample A Male 28.7
Sample B Male 31.2
Sample C Female 21.8
Sample D Female 24.6

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 3.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.7
71735072 Antisense, RP_050719_04_F12, Mouse strain C57BL/6J (56 days, male) 6.7
68844247 Antisense, RP_050222_01_B12, Mouse strain C57BL/6J (56 days, male) 5.4
71211471 Antisense, RP_050816_01_F07, Mouse strain C57BL/6J (56 days, male) 2.4
70920099 Antisense, RP_050713_02_F09, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 3.4
71735072 Antisense, RP_050719_04_F12, Mouse strain C57BL/6J (56 days, male) 6.1
68844247 Antisense, RP_050222_01_B12, Mouse strain C57BL/6J (56 days, male) 5.1
71211471 Antisense, RP_050816_01_F07, Mouse strain C57BL/6J (56 days, male) 2.1
70920099 Antisense, RP_050713_02_F09, Mouse strain C57BL/6J (56 days, male) 0.2

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